View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8155_high_1 (Length: 503)
Name: NF8155_high_1
Description: NF8155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8155_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 52712533 - 52712030
Alignment:
| Q |
1 |
acagctggaccgactaagaaccttacagccatagaatatgttgcaannnnnnncccacatgaaatcagcttaggttgtaatcccatgaacaaacctagac |
100 |
Q |
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| T |
52712533 |
acagctggaccgaccaagaaccttacagccatagaatatgttgcaatttttttcccacgtgaaatcagcttaggttgtaatcccatgaacaaacctagac |
52712434 |
T |
|
| Q |
101 |
taaacatggccattccaagaccagcattagatagtattgagatggaaccgtttacaatcgagggcatttcaatgtgcaacctgcagtgattatttatttg |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52712433 |
taaacatggccattccaagaccagtattagatagtattgagatggaaccgtttacaatcgagggcatttcaatgtgcaacctgcagtgatt---tatttg |
52712337 |
T |
|
| Q |
201 |
aagtttaaaaaatctttaatattattattcatgatccaacgttataa-------------------aagatagaagattttaatacccaaatgatataag |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
52712336 |
aagtttaaaaaatctttaatattattattcatgatccaacgttataattgattgataaagacaaaaaagatagaagatttttatacccaaatgatataag |
52712237 |
T |
|
| Q |
282 |
agaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctcccgaccatgacgaggatgagttttgtcatcacacttgctggt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
52712236 |
agaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctccaaaccatgaagaggatgagttttgtcatcacacttgctggt |
52712137 |
T |
|
| Q |
382 |
ggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatggagactttgtttcttcctcaatttcaaactctc |
481 |
Q |
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| T |
52712136 |
ggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatggagactttgtttcttcctcaatttcaaagtctc |
52712037 |
T |
|
| Q |
482 |
tttctct |
488 |
Q |
| |
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||||||| |
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| T |
52712036 |
tttctct |
52712030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 263 - 488
Target Start/End: Complemental strand, 52717852 - 52717627
Alignment:
| Q |
263 |
aatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctcccgaccatgacgaggatgagttt |
362 |
Q |
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|||||| |||||||| |||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||| ||||||| |||||| ||| | |
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| T |
52717852 |
aatacctaaatgatacaagagaccaaacaagtcctataagacttgagtaggtattaggatttctgatgagttttctccaaaccatgatgaggattagtct |
52717753 |
T |
|
| Q |
363 |
tgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatggagactttgtttct |
462 |
Q |
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|||||| ||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
52717752 |
tgtcatgacacttgctggtggcatctgtgtatttttgcttacatcccctcctccttccaagtccatcttcttctggctaatatatggagactttactgct |
52717653 |
T |
|
| Q |
463 |
tcctcaatttcaaactctctttctct |
488 |
Q |
| |
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||||||||||||| || |||||||| |
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| T |
52717652 |
tcctcaatttcaacatccctttctct |
52717627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 52718021 - 52717929
Alignment:
| Q |
93 |
acctagactaaacatggccattccaagaccagcattagatagtattgagatggaaccgtttacaatcgagggcatttcaatgtgcaacctgca |
185 |
Q |
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||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| || |||||||||||||| |||||||| |
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| T |
52718021 |
acctagactgaacatggccattccaagaccagcatcagacagtattgagatggaaccttttacaatggatggcatttcaatgtgaaacctgca |
52717929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 52718187 - 52718092
Alignment:
| Q |
1 |
acagctggaccgactaagaaccttacagccatagaatatgttgcaannnnnnncccacatgaaatcagcttaggttgtaatcccatgaacaaacct |
96 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||| ||||||||| |||| |
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| T |
52718187 |
acagctggaccggtcaagaaccttacagccatagaaaatgttgcaactcgttttccacatgcaatcagcttaggctgtaaagccatgaacagacct |
52718092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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