View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8155_low_2 (Length: 411)
Name: NF8155_low_2
Description: NF8155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8155_low_2 |
 | |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 1058788 - 1058399
Alignment:
| Q |
18 |
aataccatatttattgggggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaatt |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1058788 |
aataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaatt |
1058689 |
T |
|
| Q |
118 |
ccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1058688 |
ccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgt |
1058589 |
T |
|
| Q |
218 |
cgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1058588 |
cgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgt |
1058489 |
T |
|
| Q |
318 |
tacagaattgtaaaatgtcctagtgccctctaaagcaacattgtattatgtatggtacattgaataattttttaattttggagatatttgtaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1058488 |
tacagaattgtaaaatgtcctagtgccctctaaagcaaaattgtat----tatggtacattgaagaattttttaattttggagatatttgtaaa |
1058399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 1071607 - 1071282
Alignment:
| Q |
18 |
aataccatatttattgggggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaatt |
117 |
Q |
| |
|
|||||| ||||||||| |||||||| |||||||||||||||||||| | || || |||||| ||||||||| ||| |||| ||||||||||||||| ||| |
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|
| T |
1071607 |
aataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctccacattctgaatactctgcaaaaggtgataatcttatt |
1071508 |
T |
|
| Q |
118 |
ccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgt |
217 |
Q |
| |
|
||| ||| |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
1071507 |
ccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgacaacggttctcaagggatccaccatactcatctgtcctgt |
1071408 |
T |
|
| Q |
218 |
cgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgt |
317 |
Q |
| |
|
| ||||||| ||||||||||||||| ||||| | |||||||| ||| ||||||||||||||||||||||| ||||||||||| | ||||| | |||||| |
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|
| T |
1071407 |
cattcactttatctttcatgaattgttcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaatttgta-ccccactaagtatga |
1071309 |
T |
|
| Q |
318 |
tacagaattgtaaaatgtcctagtgcc |
344 |
Q |
| |
|
|||| ||||| |||||||||||||||| |
|
|
| T |
1071308 |
tacataattggaaaatgtcctagtgcc |
1071282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 1065880 - 1065545
Alignment:
| Q |
18 |
aataccatatttattgggggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaatt |
117 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||| |||| || |||||| ||||||||||||| || | ||||||||||||||| ||| |
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|
| T |
1065880 |
aataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtctccacattctgcatactccgcaaaaggtgataatcttatt |
1065781 |
T |
|
| Q |
118 |
ccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgt |
217 |
Q |
| |
|
||| ||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| || || ||||||||||||||||| |||| |
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|
| T |
1065780 |
ccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaatcgacagcggttctccagagacccaccatattcatctgtcctgt |
1065681 |
T |
|
| Q |
218 |
cgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacccccaatgagtatgt |
317 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||| |||||||||||| ||| | | ||||||| |
|
|
| T |
1065680 |
cattcactttatctttcatgaattgctcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaatttgc-gccctagtaagtatgt |
1065582 |
T |
|
| Q |
318 |
tacagaattgtaaaatgtcctagtgccctctaaagca |
354 |
Q |
| |
|
|| | ||||||||||||||| ||||| |||||||||| |
|
|
| T |
1065581 |
tatataattgtaaaatgtcccagtgctctctaaagca |
1065545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 1053523 - 1053238
Alignment:
| Q |
18 |
aataccatatttattgggggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaatt |
117 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||| |||| ||| || ||| | ||||||||||||| | ||| |
|
|
| T |
1053523 |
aataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctccacaatctccaaatttttcaaaaggtgataattttatt |
1053424 |
T |
|
| Q |
118 |
ccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgt |
217 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
1053423 |
ccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaagggttccaccatattcatctgttctgt |
1053324 |
T |
|
| Q |
218 |
cgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacc |
303 |
Q |
| |
|
|||| ||| ||||||||||||||| |||| || |||||||| ||| ||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
1053323 |
cgtttgctttatctttcatgaattgttcaactaggtagccatgagctccatggatttcaaccccatcaaaacctacaatttgcacc |
1053238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 28 - 303
Target Start/End: Complemental strand, 1044255 - 1043980
Alignment:
| Q |
28 |
ttattgggggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctat |
127 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||||| ||||||| |||||| | | |||||||||||||| ||||||||||| |||||||||| | ||| |
|
|
| T |
1044255 |
ttattgagggcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttat |
1044156 |
T |
|
| Q |
128 |
ctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttg |
227 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
1044155 |
ctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcacttt |
1044056 |
T |
|
| Q |
228 |
atctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgcacc |
303 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| |||||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
1044055 |
atctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcacc |
1043980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 28 - 301
Target Start/End: Complemental strand, 1033868 - 1033595
Alignment:
| Q |
28 |
ttattgggggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctat |
127 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||||| |||||| | |||||| || ||| | |||||||||||||||||||||| ||| | |
|
|
| T |
1033868 |
ttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactcttt |
1033769 |
T |
|
| Q |
128 |
ctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttg |
227 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
1033768 |
ctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatccaccatattcatctgttctatcattcacttt |
1033669 |
T |
|
| Q |
228 |
atctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgca |
301 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| ||||| | |||||| |||||||| ||||||||||||| |
|
|
| T |
1033668 |
atctttcatgaattgttcaagtaggtagccatgagctccatgaagttcaacaccatcaaaacctgcaatttgca |
1033595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 1046848 - 1046579
Alignment:
| Q |
18 |
aataccatatttattgggggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaatt |
117 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||| |||||| | | ||||| |||||| |||||||| | | |||||||||||||||| | | ||| |
|
|
| T |
1046848 |
aataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaaaaggtgatagttttatt |
1046749 |
T |
|
| Q |
118 |
ccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgt |
217 |
Q |
| |
|
||| ||| || ||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
1046748 |
ccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatctgttctgt |
1046649 |
T |
|
| Q |
218 |
cgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaa |
287 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||| ||| ||| |||||||| | ||||||||||||||||| |
|
|
| T |
1046648 |
cattcactttatctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatcaaa |
1046579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 25 - 300
Target Start/End: Original strand, 1640685 - 1640960
Alignment:
| Q |
25 |
tatttattgggggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttc |
124 |
Q |
| |
|
|||||| || |||||||| |||||||||| ||||||||| ||||| |||||| |||||||| ||||||||| ||||| ||||||||||||||| || |
|
|
| T |
1640685 |
tatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcgataatctaattccaactc |
1640784 |
T |
|
| Q |
125 |
tatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatctgttctgtcgttcac |
224 |
Q |
| |
|
| ||||||||||||||||| |||| |||||||||| ||||||| | | ||||||||||| ||||||| |||||| |||| ||| |||| ||| ||||| |
|
|
| T |
1640785 |
tttctgcacctatctcattcacaactgcttcaacaatttccaaagcgaatcgacaacggttttcaagggttccaccgtatttatcagttcggtcattcac |
1640884 |
T |
|
| Q |
225 |
ttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgc |
300 |
Q |
| |
|
|| ||||||||| ||||||||||||| ||| || | |||||||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
1640885 |
tttatctttcataaattgctcaagtaggtaaccgtgagccccatggatctcaactccatcaaaacctgcaatttgc |
1640960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 109 - 301
Target Start/End: Original strand, 44171260 - 44171452
Alignment:
| Q |
109 |
aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcat |
208 |
Q |
| |
|
|||||||||||| | | ||||| ||||||||||| |||||||||||||||||||||| ||| || ||| |||||||| ||||||||||||||||||| |
|
|
| T |
44171260 |
aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcat |
44171359 |
T |
|
| Q |
209 |
ctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgca |
301 |
Q |
| |
|
||||| || | ||||||| ||| ||||||||||| ||||||| |||||||| ||| ||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
44171360 |
ctgttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgca |
44171452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 109 - 301
Target Start/End: Original strand, 44191556 - 44191748
Alignment:
| Q |
109 |
aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcat |
208 |
Q |
| |
|
|||||||||||| | | ||||| ||||||||||| |||||||||||||||||||||| ||| || ||| |||||||| ||||||||||||||||||| |
|
|
| T |
44191556 |
aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcat |
44191655 |
T |
|
| Q |
209 |
ctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgca |
301 |
Q |
| |
|
||||| || | ||||||| ||| ||||||||||| ||||||| |||||||| ||| ||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
44191656 |
ctgttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgca |
44191748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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