View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8155_low_3 (Length: 361)

Name: NF8155_low_3
Description: NF8155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8155_low_3
NF8155_low_3
[»] chr4 (6 HSPs)
chr4 (12-361)||(42011692-42012041)
chr4 (48-225)||(56224403-56224580)
chr4 (28-179)||(23907813-23907964)
chr4 (28-251)||(48623966-48624189)
chr4 (27-227)||(16001403-16001604)
chr4 (34-182)||(27451671-27451819)
[»] chr7 (4 HSPs)
chr7 (28-251)||(32629232-32629455)
chr7 (28-165)||(33351330-33351467)
chr7 (28-135)||(11592310-11592417)
chr7 (37-182)||(24178704-24178849)
[»] chr1 (4 HSPs)
chr1 (80-251)||(32405891-32406062)
chr1 (28-179)||(49348912-49349063)
chr1 (35-131)||(52835763-52835859)
chr1 (105-189)||(26443794-26443878)
[»] chr8 (6 HSPs)
chr8 (28-227)||(13588329-13588527)
chr8 (28-251)||(15216708-15216930)
chr8 (28-251)||(36543772-36543995)
chr8 (48-242)||(41148176-41148370)
chr8 (62-139)||(35753957-35754034)
chr8 (84-189)||(31977284-31977389)
[»] chr6 (4 HSPs)
chr6 (28-251)||(20429076-20429299)
chr6 (28-164)||(9705421-9705557)
chr6 (28-179)||(6081068-6081219)
chr6 (71-131)||(20473238-20473298)
[»] chr3 (5 HSPs)
chr3 (79-189)||(27916254-27916364)
chr3 (28-180)||(9257721-9257873)
chr3 (28-182)||(3368383-3368537)
chr3 (62-179)||(51449216-51449332)
chr3 (33-82)||(36810074-36810123)
[»] chr2 (4 HSPs)
chr2 (76-216)||(11502986-11503126)
chr2 (55-165)||(8179440-8179550)
chr2 (47-132)||(7136193-7136278)
chr2 (76-133)||(37280776-37280833)
[»] chr5 (4 HSPs)
chr5 (28-135)||(2077027-2077134)
chr5 (22-179)||(1289039-1289196)
chr5 (28-179)||(20317611-20317762)
chr5 (33-133)||(26585-26685)
[»] scaffold0024 (1 HSPs)
scaffold0024 (33-251)||(74774-74992)
[»] scaffold0073 (2 HSPs)
scaffold0073 (84-189)||(20814-20919)
scaffold0073 (84-189)||(27100-27205)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 42012041 - 42011692
Alignment:
12 agatgaagaggtaacatgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttattt 111  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
42012041 agatgaagaggtgacatgtactaaagatgaagagtataaagtcttggttgaggaaagatatatcaaggatagatggaagagatattttcacaacttattt 42011942  T
112 aacgaaagatatgagatcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaa 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
42011941 aacgaaagatatgagatcttaccatactttgacagacttgacatcagagaggaggatcgaaactataactactgttgtcaggttcaagcacacggtgtaa 42011842  T
212 aagaagtgttgaaaagtatgggtaacggcaaagcagttggccaaacaatatacctattgacacgtaccaaaaacactttttagtaatggggcttaagttg 311  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
42011841 aagaagtgttgaaaagtatgggtaacggcaaagaagttggccaaacaatatacctattgacaggtaccaaaaacactttttagtaatggggcttaagttg 42011742  T
312 attaagggatatggtggcaatttcgttattattctgaactttgttaagtt 361  Q
    ||||||||||||||||| |||||||||||||||  ||| |||||||||||    
42011741 attaagggatatggtggtaatttcgttattatttcgaattttgttaagtt 42011692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 56224403 - 56224580
Alignment:
48 taaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacagg 147  Q
    |||||| |||||| |||||||  |||| ||||||||||||||||   ||||||||||||||||||| ||| ||||||||||||||||| | ||| |||||    
56224403 taaagttttggtttaggaaaaggatataaaggatagatggaagaagcattttcacaacttatttaatgaacgatatgagatcttaccagagtttaacagg 56224502  T
148 cttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaa 225  Q
    || ||||||||||| ||| || | ||||||||||||| ||||  | |||||| ||| |  |||||||||| |||||||    
56224503 ctagacatcagagaagaggattataactataactactattgttggattcaagaacatgaggtaaaagaagcgttgaaa 56224580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 23907964 - 23907813
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||| |||  ||||| |||||| | |||| |||| |||||||||||  |||||||||||| ||||||| ||| |||||||||    
23907964 tgtattaaggatgaagagggtagagttctggttcaggaaagagatattaagggtagatggaagaagtattttcacaacctatttaatgaaggatatgaga 23907865  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataa 179  Q
    |||||||| ||| | ||||| | |||||| |||||||| | | |||||||||    
23907864 tcttaccaaactctaacagggtagacatcggagaggaggaccgaaactataa 23907813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 48624189 - 48623966
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||| ||| |||||| |||||| | |||| |||| ||||||||| |  |||||||||||  ||||||||||| |||||||||    
48624189 tgtattaaggatgaagagggtagagttttggttcaggaaagagatattaagggtagatggaaaaagtattttcacaaactatttaacgaaggatatgaga 48624090  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaaag 227  Q
    |||||||| | | | ||||| | |||||| |||||||| | | |||||||||||| | | ||| | ||||||  ||||  || | ||||| |||||||||    
48624089 tcttaccagattctaacaggttagacatcggagaggaggaccgaaactataactattatcgtcggattcaagagcacgaggttatagaagcgttgaaaag 48623990  T
228 tatgggtaacggcaaagcagttgg 251  Q
     ||| |||  ||||| ||||||||    
48623989 gatgagtagtggcaaggcagttgg 48623966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 16001604 - 16001403
Alignment:
27 atgtactaaagatgaagagtgtaaagtcttggttgag--gaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatg 124  Q
    ||||| ||||||||||||| ||| |||||||||| |   ||||   |||| || |||||||||||||  ||||| |||||||||||||| ||| | ||||    
16001604 atgtattaaagatgaagagggtatagtcttggttcatatgaaagggatattaacgatagatggaagaagtatttccacaacttatttaatgaagggtatg 16001505  T
125 agatcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaa 224  Q
    ||||||||||||| | | |||| || ||||||||||||||| |  ||||||||| ||| | |  || ||||||||  ||||  |||||||||| ||||||    
16001504 agatcttaccatattataacagactagacatcagagaggaggactaaaactatagctattatcatc-ggttcaagagcacgaggtaaaagaagcgttgaa 16001406  T
225 aag 227  Q
    |||    
16001405 aag 16001403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 27451819 - 27451671
Alignment:
34 aaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttac 133  Q
    |||||||||||  ||| ||| |||||| | |||| | |||| |||||||||||||| |  ||||| || ||||||||||| ||| |||||||||||||||    
27451819 aaagatgaagatggtagagttttggttcaagaaagaaatattaaggatagatggaaaatgtatttccataacttatttaatgaaggatatgagatcttac 27451720  T
134 catactttgacaggcttgacatcagagaggagaatcaaaactataacta 182  Q
    || ||| | ||||| | |||||||||| ||||   | ||||||||||||    
27451719 cagactctaacaggttagacatcagagcggagggccgaaactataacta 27451671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 32629232 - 32629455
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||| ||| |||||| | |||| | |||| ||||||||||||||||  ||||| |||||||||||||| ||| |||||||||    
32629232 tgtattaaggatgaagagggtagagttttggttcaagaaagagatattaaggatagatggaagaagtatttccacaacttatttaatgaaggatatgaga 32629331  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaaag 227  Q
    |||||||| ||| | ||| | | ||||||||||||||| | |||||||||||||| | | ||| | |||| |  ||||  || ||||||| |||||||||    
32629332 tcttaccagactctaacatgttagacatcagagaggaggaccaaaactataactattatcgtcggattcaggagcacgaggtgaaagaagcgttgaaaag 32629431  T
228 tatgggtaacggcaaagcagttgg 251  Q
     ||| |||| || || ||||||||    
32629432 gatgagtaatggtaaggcagttgg 32629455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 33351467 - 33351330
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||| |||  ||||| |||||| | |||| |||| |||||||||||  |||||||||||| ||||||| ||| |||||||||    
33351467 tgtattaaggatgaagagggtagagttctggttcaggaaagagatattaagggtagatggaagaagtattttcacaacctatttaatgaaggatatgaga 33351368  T
128 tcttaccatactttgacaggcttgacatcagagaggag 165  Q
    |||||||| ||| | ||||| | |||||| ||||||||    
33351367 tcttaccagactctaacaggttagacatcggagaggag 33351330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 11592310 - 11592417
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||| |||  ||||| |||||| | |||| |||| |||||||||||  |||||||||||| ||||||| ||| |||||||||    
11592310 tgtattaaggatgaagagggtagagttctggttcaggaaagagatattaagggtagatggaagaagtattttcacaacctatttaatgaaggatatgaga 11592409  T
128 tcttacca 135  Q
    ||||||||    
11592410 tcttacca 11592417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 24178849 - 24178704
Alignment:
37 gatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttaccat 136  Q
    ||||||||| ||| ||| |||||| |  ||| | |||| ||||||||||||| ||  ||||| |||||||||||||| ||| |||||||||||||||||     
24178849 gatgaagagggtagagttttggttcaaaaaagagatattaaggatagatggacgaagtatttccacaacttatttaatgaaggatatgagatcttaccag 24178750  T
137 actttgacaggcttgacatcagagaggagaatcaaaactataacta 182  Q
    ||||| ||| | | || | |||||||||| | | || |||||||||    
24178749 actttaacatgttagataacagagaggaggaccgaacctataacta 24178704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 32406062 - 32405891
Alignment:
80 atagatggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataa 179  Q
    |||||||||||| |||||| || ||||||||||| ||| |||||||||| |||||||||| | ||| ||| ||||||||||||||| ||| |||||||||    
32406062 atagatggaagaaatatttccataacttatttaatgaaggatatgagattttaccatactctaacatgctagacatcagagaggaggatcgaaactataa 32405963  T
180 ctactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaaagtatgggtaacggcaaagcagttgg 251  Q
    ||||| |  || | |||||| ||| |  ||||||||||  |||||||| ||| |||| ||||| ||||||||    
32405962 ctactatcatcggattcaagaacatgtggtaaaagaagcattgaaaaggatgagtaatggcaaggcagttgg 32405891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 49349063 - 49348912
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||| |||  ||||| |||||| | |||| |||| |||||||||||  |||||||||||| ||||||| ||| |||||||||    
49349063 tgtattaaggatgaagagggtagagttctggttcaggaaagagatattaagggtagatggaagaagtattttcacaacctatttaatgaacgatatgaga 49348964  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataa 179  Q
    |||||||| ||| | ||| | | |||||| |||||||| | | |||||||||    
49348963 tcttaccagactctaacatgttagacatcggagaggaggaccgaaactataa 49348912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 52835763 - 52835859
Alignment:
35 aagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatctt 131  Q
    ||||| ||||| ||||||| |||||| | |||||| ||||  ||||| |||| ||||  ||| |||||||||||||||| |||  ||||||||||||    
52835763 aagattaagagggtaaagttttggttcatgaaaaagatatataggatggatgaaagaagtatcttcacaacttatttaaagaagaatatgagatctt 52835859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 26443794 - 26443878
Alignment:
105 cttatttaacgaaagatatgagatcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgt 189  Q
    |||||||||  || ||||||||||||||||| |||||||||  | |||||| ||||||||   |||||| ||||| |||| ||||    
26443794 cttatttaataaaggatatgagatcttaccaaactttgacaaacatgacattagagaggaagttcaaaattataattactattgt 26443878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 13588329 - 13588527
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| |||| |||||||| ||||||| | |||| || ||| | ||||||| |||||||| |||| ||||||||||| ||||||||| ||| |||||||||    
13588329 tgtattaaaaatgaagagggtaaagtttaggttaag-aaagagatatcaatgatagatgaaagaaatattttcacaccttatttaatgaatgatatgaga 13588427  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaaag 227  Q
    ||||| || ||| | ||| ||| ||||||| ||||||| ||| |||||||||||||| | ||  | ||||||| ||||  ||||||||||  ||||||||    
13588428 tcttatcagactctaacatgctagacatcatagaggaggatcgaaactataactactatcgtaggattcaagcgcacgaggtaaaagaagcattgaaaag 13588527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 15216930 - 15216708
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||| ||| |||||| | |||||  |||| ||||||||||||||||  ||||| |||||||||||||| ||| ||||| |||    
15216930 tgtattaaggatgaagagggtagagttttggttcaagaaaag-atattaaggatagatggaagaagtatttccacaacttatttaatgaaggatattaga 15216832  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaaag 227  Q
    | |||||| ||| | ||||| | ||||||||||||||| | |  ||||||||||| | | ||||| |||| |  ||||   | |||||||  ||||||||    
15216831 ttttaccagactctaacaggttagacatcagagaggaggaccggaactataactattatcgtcagattcaggagcacgagatgaaagaagcattgaaaag 15216732  T
228 tatgggtaacggcaaagcagttgg 251  Q
     ||| |||| ||||| ||||||||    
15216731 gatgagtaatggcaaggcagttgg 15216708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 36543772 - 36543995
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| |||||||  ||||| |||||| | |||| |||| |||||||||||  ||||||| |||| ||||||| ||| |||||||||    
36543772 tgtattaaggatgaagagggtaaagttctggttcaggaaagagatattaagggtagatggaagaagtattttctcaacctatttaatgaaggatatgaga 36543871  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaaag 227  Q
    |||||||| ||| | ||||| | ||||||  ||||||  | | ||||||||| || | | ||| | ||||||  ||||  || | ||||| |||||||||    
36543872 tcttaccagactctaacaggttagacatcgaagaggatgaccgaaactataattattatcgtcggattcaagagcacgaggttagagaagcgttgaaaag 36543971  T
228 tatgggtaacggcaaagcagttgg 251  Q
     |||||||  ||||| ||||||||    
36543972 gatgggtagtggcaaggcagttgg 36543995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 41148176 - 41148370
Alignment:
48 taaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacagg 147  Q
    |||||| |||||| |||||||  |||| |||||||  || ||||  ||||| ||||||||||||| |||  | |||||||| ||| || ||  | |||||    
41148176 taaagttttggttcaggaaaaggatataaaggataagtgaaagacgtatttccacaacttatttagcgattggtatgagattttaacaaacactaacagg 41148275  T
148 cttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaaagtatgggtaacggcaa 242  Q
    || |||||||| |||||| |||||||||||||||||| |||||   |||||| ||||   |||||| ||| ||||||||| ||| |||| |||||    
41148276 ctagacatcagcgaggaggatcaaaactataactactattgtctaattcaagaacacatagtaaaaaaagcgttgaaaaggatgagtaatggcaa 41148370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 35754034 - 35753957
Alignment:
62 aggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatact 139  Q
    |||||| | |||| ||| ||||||||||||  ||||| |||||||||||||||||| | |||| |||||||| |||||    
35754034 aggaaagagatataaagcatagatggaagatgtatttccacaacttatttaacgaaggttatgtgatcttactatact 35753957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 31977284 - 31977389
Alignment:
84 atggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactac 183  Q
    ||||||||  |||||||| || | |||||| ||| | ||||||||||||||| ||| | ||| ||| |||||  || ||||| ||| |||||||||||||    
31977284 atggaagaattattttcataattgatttaaagaaggttatgagatcttaccagactctaacatgctagacatttgataggaggatcgaaactataactac 31977383  T
184 tgttgt 189  Q
    | ||||    
31977384 tattgt 31977389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 20429299 - 20429076
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||| ||| ||| ||| |||||| | |||| | |||| |||||||||||||||| |||||| |||||||||||||| ||| |||| ||||    
20429299 tgtattaaggatgaggagggtagagttttggttcaagaaagagatattaaggatagatggaagaaatatttccacaacttatttaatgaaggatacgaga 20429200  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaaag 227  Q
    |||||||| ||| | ||||| | ||||||||||||||| | |  ||||||||||| | | ||| | |||| |  ||||  || ||||||  |||||||||    
20429199 tcttaccagactctaacaggttagacatcagagaggaggaccggaactataactattatcgtcggattcaggagcacgaagtgaaagaaccgttgaaaag 20429100  T
228 tatgggtaacggcaaagcagttgg 251  Q
     ||| |||| ||||| ||||||||    
20429099 gatgagtaatggcaaggcagttgg 20429076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 9705421 - 9705557
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||  ||| ||| |||||| | |||| | |||| ||||||||||||||||  ||||| |||||||||||||| ||| |||||||||    
9705421 tgtattaaggatgaagatggtagagttttggttcaagaaatagatattaaggatagatggaagaagtatttccacaacttatttaatgaaggatatgaga 9705520  T
128 tcttaccatactttgacaggcttgacatcagagagga 164  Q
    || ||||| ||| | || || | ||||||||||||||    
9705521 tcataccagactctaactggttagacatcagagagga 9705557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 6081068 - 6081219
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||| |||  ||||| |||||| | |||| |||| |||||||||||  |||||||||||| ||||||| ||| |||||||||    
6081068 tgtattaaggatgaagagggtagagttctggttcaggaaagagatattaagggtagatggaagaagtattttcacaacctatttaatgaaggatatgaga 6081167  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataa 179  Q
    | |||||| ||| | ||||| | |||||| || ||||| | | |||||||||    
6081168 tattaccagactctaacaggttagacatcggacaggaggaccgaaactataa 6081219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 20473238 - 20473298
Alignment:
71 atatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatctt 131  Q
    |||| |||||||| |||||||  |||||||||||||||||||| ||| ||||||| |||||    
20473238 atataaaggataggtggaagaattattttcacaacttatttaatgaaggatatgaaatctt 20473298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 27916254 - 27916364
Alignment:
79 gatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacaggcttgacatcagagaggagaatcaaaactata 178  Q
    |||||||||||||  ||||| |||||| ||||||| ||| |||||||||||||||||  || | ||| ||| |||||||||||| || ||||||||||||    
27916254 gatagatggaagaagtatttccacaacctatttaatgaaggatatgagatcttaccagcctctaacatgctagacatcagagagaaggatcaaaactata 27916353  T
179 actactgttgt 189  Q
    |||||| ||||    
27916354 actactattgt 27916364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 9257721 - 9257873
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| |||||||||| |  ||| ||| || ||| |||||| | |||| ||| ||||||||||||  ||| | |||||||||||||| ||| |||||||||    
9257721 tgtattaaagatgaataaggtagagtttttgttcaggaaatagatataaagaatagatggaagaattatctccacaacttatttaatgaaggatatgaga 9257820  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataac 180  Q
    ||||| |||| | | ||| ||| |||||  |||||||| | ||||||||||||    
9257821 tcttatcataatctaacatgctagacattggagaggaggaccaaaactataac 9257873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 3368383 - 3368537
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| |||||||||| || ||||||| ||| ||   |||| | |||| || |||||||||||||| |||||  ||||||||||||| ||| ||||||  |    
3368383 tgtattaaagatgaaaagagtaaagttttgattcgtgaaagagatataaatgatagatggaagaggtatttctacaacttatttaatgaaggatatgcaa 3368482  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataacta 182  Q
    |||||||| ||||  ||| ||| ||||||  | ||||||||  ||||||||||||    
3368483 tcttaccaaacttcaacatgctagacatctaataggagaattgaaactataacta 3368537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 51449332 - 51449216
Alignment:
62 aggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacaggcttgacatcagaga 161  Q
    |||||| | |||| |||| |||||||||||  ||||||||||||| |||||| ||| ||||||||||||||||  ||| | ||||| | |||||| ||||    
51449332 aggaaagagatattaagggtagatggaagaagtattttcacaact-atttaatgaaggatatgagatcttacccgactctaacaggttagacatcggaga 51449234  T
162 ggagaatcaaaactataa 179  Q
    |||| | | |||||||||    
51449233 ggaggaccgaaactataa 51449216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 36810074 - 36810123
Alignment:
33 taaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggata 82  Q
    ||||||||||||| ||||||| ||||||||||||| | |||| |||||||    
36810074 taaagatgaagagggtaaagttttggttgaggaaagagatataaaggata 36810123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 216
Target Start/End: Complemental strand, 11503126 - 11502986
Alignment:
76 aaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacaggcttgacatcagagaggagaatcaaaact 175  Q
    ||||||| |||||||| |||||| ||||| |||||||| ||| |||||||||| |||||| | | | ||| ||| ||||| ||||| |||  || |||||    
11503126 aaggatatatggaagaaatatttccacaatttatttaatgaaggatatgagattttaccagaatgtaacatgctagacattagagaagagggtcgaaact 11503027  T
176 ataactactgttgtcaggttcaagcacacggtgtaaaagaa 216  Q
    ||||||||| ||||||| ||| || |||||| |||||||||    
11503026 ataactactattgtcagattctagaacacggggtaaaagaa 11502986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 8179440 - 8179550
Alignment:
55 ttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacaggcttgaca 154  Q
    |||||| |||||| | |||| |||| |||||||||||  |||||||||||| ||||||| ||| ||||||||||||||||| ||| | ||||| | ||||    
8179440 ttggttcaggaaagagatattaagggtagatggaagaagtattttcacaacctatttaatgaaggatatgagatcttaccagactctaacaggttagaca 8179539  T
155 tcagagaggag 165  Q
    || ||||||||    
8179540 tcggagaggag 8179550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 7136278 - 7136193
Alignment:
47 gtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatctta 132  Q
    ||||||| |||||| |  ||||| |||| |||| ||||||||||| |||||| |||||||||||||| ||| |||||| |||||||    
7136278 gtaaagttttggttcaacaaaaagatataaagggtagatggaagaaatatttgcacaacttatttaatgaaggatatgggatctta 7136193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 37280776 - 37280833
Alignment:
76 aaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatcttac 133  Q
    ||||||| ||| ||||  ||||| |||||||| |||||||||||||||||||||||||    
37280776 aaggataaatgaaagaagtatttccacaacttgtttaacgaaagatatgagatcttac 37280833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 2077134 - 2077027
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||||| | |||||| |||||| | |||| |||| |||||||||||  |||||||||||| ||||||| ||| |||||||||    
2077134 tgtattaaggatgaagagggtaaaattttggttcaggaaagagatattaagggtagatggaagaagtattttcacaacctatttaatgaaggatatgaga 2077035  T
128 tcttacca 135  Q
    ||||||||    
2077034 tcttacca 2077027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 1289196 - 1289039
Alignment:
22 gtaacatgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagat 121  Q
    |||| ||||| ||| |||||| || ||| ||| |||||| || ||| | |||| |||| |||||||||||  |||||||||||| ||||||| ||| |||    
1289196 gtaaaatgtattaaggatgaaaagggtagagttttggttcagaaaagagatattaagggtagatggaagaattattttcacaacctatttaatgaaggat 1289097  T
122 atgagatcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataa 179  Q
    ||||| | |||||| ||||| ||||| | |||||| |||||||| | | |||||||||    
1289096 atgaggttttaccagactttaacaggttagacatcggagaggaggaccgaaactataa 1289039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 20317611 - 20317762
Alignment:
28 tgtactaaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgaga 127  Q
    |||| ||| ||||||||| ||| |||  | ||| |||||| | |||| |||| |||||||||||  |||||||||||| ||||||| ||| |||||||||    
20317611 tgtattaaggatgaagagggtagagttctagttcaggaaagagatattaagggtagatggaagaagtattttcacaacctatttaatgaaggatatgaga 20317710  T
128 tcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataa 179  Q
     ||||||| ||| | ||||| | |||||| |||||||| | | |||||||||    
20317711 ccttaccagactctaacaggttagacatcggagaggaggaccgaaactataa 20317762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 26585 - 26685
Alignment:
33 taaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatctta 132  Q
    ||||||||||||| ||| ||| || ||| |||||| | |||| | ||||||||||||||  || ||||||  ||||||||| ||| |||||||||| |||    
26585 taaagatgaagagggtatagttttagtttaggaaatagatataatggatagatggaagaagtactttcacgtcttatttaatgaaggatatgagatatta 26684  T
133 c 133  Q
    |    
26685 c 26685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 74992 - 74774
Alignment:
33 taaagatgaagagtgtaaagtcttggttgaggaaaaatatatcaaggatagatggaagagatattttcacaacttatttaacgaaagatatgagatctta 132  Q
    |||||||||| || ||| ||| ||||||  ||||| |||||| ||||||| ||| ||||  | ||| || |||||||||||  || ||||||||||||||    
74992 taaagatgaaaagggtagagttttggttttggaaagatatataaaggatatatgaaagaagtgtttccataacttatttaataaaggatatgagatctta 74893  T
133 ccatactttgacaggcttgacatcagagaggagaatcaaaactataactactgttgtcaggttcaagcacacggtgtaaaagaagtgttgaaaagtatgg 232  Q
    ||  ||| | ||||||| ||  || |||||||| | | |||||| ||||||| | ||||| ||||||  |||   |||||||||||||||||||| |||     
74892 ccggactctaacaggctagaggtcggagaggaggaccgaaactaaaactactatcgtcagattcaagagcacaaggtaaaagaagtgttgaaaaggatga 74793  T
233 gtaacggcaaagcagttgg 251  Q
    |||| |||||  |||||||    
74792 gtaatggcaagacagttgg 74774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 20919 - 20814
Alignment:
84 atggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactac 183  Q
    ||||||||  |||||||| || | |||||| ||| | ||||||||||||||| ||| | ||| ||| |||||  || ||||| ||| |||||||||||||    
20919 atggaagaattattttcataattgatttaatgaaggttatgagatcttaccagactctaacatgctagacatttgataggaggatcgaaactataactac 20820  T
184 tgttgt 189  Q
    | ||||    
20819 tattgt 20814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 27205 - 27100
Alignment:
84 atggaagagatattttcacaacttatttaacgaaagatatgagatcttaccatactttgacaggcttgacatcagagaggagaatcaaaactataactac 183  Q
    ||||||||  |||||||| || | |||||| ||| | ||||||||||||||| ||| | ||| ||| |||||  || ||||| ||| |||||||||||||    
27205 atggaagaattattttcataattgatttaatgaaggttatgagatcttaccagactctaacatgctagacatttgataggaggatcgaaactataactac 27106  T
184 tgttgt 189  Q
    | ||||    
27105 tattgt 27100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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