View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8155_low_5 (Length: 273)
Name: NF8155_low_5
Description: NF8155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8155_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 1178037 - 1177817
Alignment:
| Q |
16 |
agggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatcaagtgaccaagagttg |
115 |
Q |
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| T |
1178037 |
agggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatcaagtgaccaagagttg |
1177938 |
T |
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| Q |
116 |
aattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcgattcggtctacgatttcatcaccaggaaagagggagcagaagta |
215 |
Q |
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| T |
1177937 |
aattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcaattcggtctacgaattgatcaccaggaaagagggagcagaagta |
1177838 |
T |
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| Q |
216 |
gatacgttccaactcctcgcc |
236 |
Q |
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| T |
1177837 |
gatatgttccaactcctcgcc |
1177817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 6840845 - 6840996
Alignment:
| Q |
18 |
ggaatcatcatacttagagtgacagaatgagggtgcagg-gggtataaggtggacctgtttagttgttgggttccatagaatcaagtgaccaaga---gt |
113 |
Q |
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| T |
6840845 |
ggaatcatcatatttaga-tcagagaatgagggtgcaggaggggatacggtgaacttgtttaactgttgggttccatagaatcaagtgaccaagatttgt |
6840943 |
T |
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| Q |
114 |
tgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatg |
166 |
Q |
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| T |
6840944 |
tgaatgccaataaaaagcttttaaaaagaaaacaccattgcaattgccatatg |
6840996 |
T |
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