View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8155_low_6 (Length: 273)
Name: NF8155_low_6
Description: NF8155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8155_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 21906766 - 21906973
Alignment:
| Q |
1 |
attcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtacaatgagagagtatcctaattaaatcctttggtatacataaatata |
100 |
Q |
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| T |
21906766 |
attcattaattgacatagtaaagtatcattagatgcatgtgtaagataatcgtacaatgatagagtatactaattaaatcctttggtatacatcaatata |
21906865 |
T |
|
| Q |
101 |
caattgtgctaaaatgtgaaatcacataattattactaacctcttgtgcatcaaatatttttcgatgagttttcaattggaagaagatatatgaaacata |
200 |
Q |
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| T |
21906866 |
caattgtgctcaaatgtgaaattacataattagtaataacctcttgtgcatcaaatatttttcgatgagttttcaaatggaagaagatatatgcaacgta |
21906965 |
T |
|
| Q |
201 |
tgctagaa |
208 |
Q |
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|||||||| |
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| T |
21906966 |
tgctagaa |
21906973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30017482 - 30017537
Alignment:
| Q |
1 |
attcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtaca |
56 |
Q |
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| T |
30017482 |
attcattaattgacgtgacaacgcatcgttggatgcatgtgtaaaataattgtaca |
30017537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31772149 - 31772105
Alignment:
| Q |
1 |
attcattaattgacatgacaacgtatcagtggatgcatatgtaaa |
45 |
Q |
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| T |
31772149 |
attcattaattgacatgacaacatatcacgggatgcatgtgtaaa |
31772105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 29784937 - 29785068
Alignment:
| Q |
131 |
tattactaacctcttgtgcatcaaatatttttcgatgagttttcaattggaagaagatatatgaaacatatgctagaagcataacaacactgctagctct |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29784937 |
tattactaacctcttgtgcatcaaatatttttcgatgagttttcaattggaagaagatatatgaaacatatgctagaagcataacaacactgctagctct |
29785036 |
T |
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| Q |
231 |
tgacaattgaagagtagaattggcaatagaat |
262 |
Q |
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| T |
29785037 |
tgacaattgaagagtagaattggcaatagaat |
29785068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 24341482 - 24341543
Alignment:
| Q |
7 |
taattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtacaatgagagagtat |
68 |
Q |
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| T |
24341482 |
taattgacatgtcaacatatcattagatgcatatgtaaaataattgtacaatgagaaagtat |
24341543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33508662 - 33508739
Alignment:
| Q |
1 |
attcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtacaatgagagagtatcctaattaaa |
78 |
Q |
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||||||| ||||||| ||||| || | |||||| || ||||||||||| ||||||||||||||||| ||||||||| |
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| T |
33508662 |
attcattcattgacacgacaaaacataattggatgtatgtgtaaaataattgtacaatgagagagtatactaattaaa |
33508739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35970486 - 35970409
Alignment:
| Q |
1 |
attcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtacaatgagagagtatcctaattaaa |
78 |
Q |
| |
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|||||||||||||| ||||||| || | || |||||| |||||||||||| |||| | | ||||||| ||||||||| |
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| T |
35970486 |
attcattaattgacgtgacaacacatgattgaatgcatgtgtaaaataatcatacactcacagagtatactaattaaa |
35970409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 24080402 - 24080357
Alignment:
| Q |
4 |
cattaattgacatgacaacgtatcagtggatgcatatgtaaaataa |
49 |
Q |
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|||||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
24080402 |
cattaattgagatgacaacacatcattggatgcatatgtaaaataa |
24080357 |
T |
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