View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8155_low_7 (Length: 267)
Name: NF8155_low_7
Description: NF8155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8155_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 4745316 - 4745565
Alignment:
| Q |
1 |
aaattgagatgagatgttcagaattt-ctctatttcttaaggataatagtttcagccatataannnnnnnccatatctcttctgattatatatctactgg |
99 |
Q |
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| T |
4745316 |
aaattgagatgagatgttcagaattttctctatttcttaaggataatagtttcagccatataatttttt-ccatatctcttctgattatatatctactgg |
4745414 |
T |
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| Q |
100 |
atggacagcagcacattatgaaccttagatgggtattcgtgcatgaaatatggtgaggagcacaaattacattttacctatgtagcaccgacgcacaaca |
199 |
Q |
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| T |
4745415 |
atggacagcagcacattatgaaccttagatgggtattcgtgcatgaaatatggtgaggagcacaaattacattttacctatgtagcaccgacgcacaaca |
4745514 |
T |
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| Q |
200 |
atgacacatatagttatattcgattatttctattttcttaagttattactg |
250 |
Q |
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| T |
4745515 |
atgacacatatagttatattcgattacttctattttcttaagttattactg |
4745565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 47570015 - 47570063
Alignment:
| Q |
5 |
tgagatgagatgttcagaa-tttctctatttcttaaggataatagtttc |
52 |
Q |
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| T |
47570015 |
tgagatgagatgttcagaattttctcaatttctttaggataacagtttc |
47570063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 8923417 - 8923459
Alignment:
| Q |
205 |
acatatagttatattcgattatttctattttcttaagttatta |
247 |
Q |
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| T |
8923417 |
acatatagttacattcaattatttctattttcttaaattatta |
8923459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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