View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8155_low_8 (Length: 247)
Name: NF8155_low_8
Description: NF8155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8155_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 31651829 - 31652047
Alignment:
| Q |
19 |
ccaacgatatatcaacaaagtagaatattttccgttgtcttggccatctagacttaaacaaccattacttgaactgtgtttcacaatatgcagagcatgg |
118 |
Q |
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| T |
31651829 |
ccaacgatatatcaccaaagtagaatattttccgttgtcttggccatctagacttaaacaaccattacttgaactgtgtttcacaatatgcagagcatgg |
31651928 |
T |
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| Q |
119 |
tgaaaactttaatgttctccattatgaagttggacaaaagtatgaacctcattatgactactttatggatacttttagtactacatatgcgggtcagcgt |
218 |
Q |
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| T |
31651929 |
tgaaaactttaatgttctccattatgaagttggacaaaagtatgaacctcattatgactactttatggatacttttagtactacatatgcgggtcagcgt |
31652028 |
T |
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| Q |
219 |
atagcaacaatgctgatgt |
237 |
Q |
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| T |
31652029 |
atagcaacaatgctgatgt |
31652047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 31656687 - 31656850
Alignment:
| Q |
74 |
aaacaaccattacttgaactgtgtttcacaatatgcagagcatggtgaaaactttaatgttctccattatgaagttggacaaaagtatgaacctcattat |
173 |
Q |
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| T |
31656687 |
aaacaaccattacttgagccgtgtttcacaatatgcagagcatggcgaaagctttaatgttctccattatgaagttggacaaaagtatgaacctcattat |
31656786 |
T |
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| Q |
174 |
gactactttatggatacttttagtactacatatgcgggtcagcgtatagcaacaatgctgatgt |
237 |
Q |
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| T |
31656787 |
gactactttttggatacgtttagtactaggcatgcaggtcagcgcatagcaacaatgctgatgt |
31656850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 31630337 - 31630504
Alignment:
| Q |
70 |
acttaaacaaccattacttgaactgtgtttcacaatatgcagagcatggtgaaaactttaatgttctccattatgaagttggacaaaagtatgaacctca |
169 |
Q |
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| T |
31630337 |
acttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaagttggacaaaagtatgatcctca |
31630436 |
T |
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| Q |
170 |
ttatgactactttatggatacttttagtactacatatgcgggtcagcgtatagcaacaatgctgatgt |
237 |
Q |
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| T |
31630437 |
tttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgt |
31630504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 31646350 - 31646448
Alignment:
| Q |
72 |
ttaaacaaccattacttgaactgtgtttcacaatatgcagagcatggtgaaaactttaatgttctccattatgaagttggacaaaagtatgaacctcat |
170 |
Q |
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| T |
31646350 |
ttaaacaaccattaatttggctatgtttcacaatatgcagagaatggcgaaagcgttaatattctccattatgaagttggacaaaagtacgaacctcat |
31646448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 31637663 - 31637752
Alignment:
| Q |
70 |
acttaaacaaccattacttgaactgtgtttcacaatatgcagagcatggtgaaaactttaatgttctccattatgaagttggacaaaagta |
160 |
Q |
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| T |
31637663 |
acttaaacaactattattt-aagtttgtttcaaaacatgcagagcatggcgaagacgttaatattctccattatgaagttggacaaaagta |
31637752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 9105159 - 9105076
Alignment:
| Q |
99 |
tcacaatatgcagagcatggtgaaa-actttaatgttctccattatgaagttggacaaaagtatgaacctcattatgactacttt |
182 |
Q |
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| T |
9105159 |
tcacaatatgcagagcacggtgaaggacttcaa-gttctacattatgaagttggacaaaagtatgagcctcactatgactacttt |
9105076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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