View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8156_high_2 (Length: 346)

Name: NF8156_high_2
Description: NF8156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8156_high_2
NF8156_high_2
[»] chr2 (3 HSPs)
chr2 (1-316)||(33370158-33370475)
chr2 (1-316)||(33363816-33364130)
chr2 (5-84)||(5839238-5839317)
[»] chr1 (5 HSPs)
chr1 (1-316)||(41431872-41432185)
chr1 (1-316)||(41442479-41442792)
chr1 (3-316)||(41426481-41426791)
chr1 (166-316)||(41449250-41449400)
chr1 (1-96)||(41448910-41449006)
[»] scaffold0648 (1 HSPs)
scaffold0648 (1-316)||(5967-6279)
[»] scaffold0274 (1 HSPs)
scaffold0274 (1-316)||(17179-17491)
[»] chr7 (2 HSPs)
chr7 (3-106)||(7762925-7763028)
chr7 (168-316)||(7762737-7762885)
[»] chr8 (1 HSPs)
chr8 (181-262)||(21223634-21223715)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 33370158 - 33370475
Alignment:
Q  1 agaagggactccttaccatgatggacttttcttttttgatgtttactttccccctggatatcccaatggacccc--cggtatgtggttgaggatacttta 98  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  33370158 agaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccccggtatgtggttgaggatacttta 33370257  T
Q  99 tctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| |||||||||||||| |||||||    
T  33370258 tctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccattttttttcatggcagcaagtccactaccactccggtggtc 33370357  T
Q  199 ttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactccatgtgtttc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||    
T  33370358 ttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtctggtgacaaaaatcagatgtggactccaggtgtttc 33370457  T
Q  299 gacaatgccacaggttct 316  Q
    |||||||| |||||||||    
T  33370458 gacaatgctacaggttct 33370475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 33363816 - 33364130
Alignment:
Q  1 agaagggactccttaccatgatggacttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttatc 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||| |||||||||| ||||||||| |||||||||     
T  33363816 agaagggactccttaccatgatggtcttttcttttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgagaatactttatt 33363915  T
Q  101 tgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtctt 200  Q
    |  ||||| ||||||||| || ||||| ||| |||||||||| |||||| |||  ||           ||||| | ||||||||||||||||  |||| |    
T  33363916 tagctgacattattttcttgtgcactctttttaattcaattctgacaaa-tgggacaattttttgtggggcagaaagtccactaccactctgtaggtcat 33364014  T
Q  201 cggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactccatgtgtttcga 300  Q
    ||||| || || ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  33364015 cggcttaatccaaatttgtatgattgtggcaaagtatgcctcagtctacttaacacctggtctggcgacaagaatcagatgtggactccaggtgtttcga 33364114  T
Q  301 caatgccacaggttct 316  Q
    |||||| |||||||||    
T  33364115 caatgctacaggttct 33364130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 5839317 - 5839238
Alignment:
Q  5 gggactccttaccatgatggacttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtgg 84  Q
    ||||||||||||||||| || ||||||||||| ||| ||||||| ||   ||| | |||||||| ||| |||||||||||    
T  5839317 gggactccttaccatgacggtcttttctttttcgatctttacttacctggtggctttcccaatgtaccgccggtatgtgg 5839238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 41431872 - 41432185
Alignment:
Q  1 agaagggactccttaccatgatggacttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttatc 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||| |||||||||| |||||||| |||||||||||    
T  41431872 agaagggactccttaccatgatggtcttttcttttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgatgatactttatc 41431971  T
Q  101 tgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtctt 200  Q
    |||||||| ||||||||| |||||||| ||| |||||||||||||||| | ||||||        |||||||||| ||||||||||||||||||||||||    
T  41431972 tgactgacattattttcttgttcactccttttaattcaattccgacaa-cgggtccattttttt-catggcagcaagtccactaccactctggtggtctt 41432069  T
Q  201 cggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactccatgtgtttcga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||  ||||||||| |||||||||    
T  41432070 cggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtctggcagcaagaatcagaaatggactccaggtgtttcga 41432169  T
Q  301 caatgccacaggttct 316  Q
    |||||| ||| |||||    
T  41432170 caatgctacaagttct 41432185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 41442479 - 41442792
Alignment:
Q  1 agaagggactccttaccatgatggacttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttatc 100  Q
    ||||||||||||||||||||| || |||||||||||||||||  |||||||  |||| |||||||||| |||||||||| |||||| || ||||||||||    
T  41442479 agaagggactccttaccatgacggtcttttcttttttgatgtacactttccaactggctatcccaatgtacccccggtacgtggttaagaatactttatc 41442578  T
Q  101 tgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtctt 200  Q
    |||| |||||| |||||| ||| |||| ||| ||||||||||  |||||  ||||          | |||||||  ||||||||||||||| | ||||||    
T  41442579 tgacagacgttgttttcttgttaactctttttaattcaattctaacaaaagggtc--gttattttcgtggcagctagtccactaccactctagaggtctt 41442676  T
Q  201 cggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactccatgtgtttcga 300  Q
    || ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||||||    
T  41442677 cgactcaaccctaatttgtatggctgtggtaaagtatgcctcagtctacttaacacctggtctggcgacagaaatcagatgtgggctccaggtgtttcga 41442776  T
Q  301 caatgccacaggttct 316  Q
    |||||| |||||||||    
T  41442777 caatgctacaggttct 41442792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 3 - 316
Target Start/End: Original strand, 41426481 - 41426791
Alignment:
Q  3 aagggactccttaccatgatggacttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttatctg 102  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||    
T  41426481 aagggactccttaccatgacagtcttttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatttg 41426580  T
Q  103 actgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtcttcg 202  Q
     | ||  ||| ||||| |||||||| ||| ||||||||||||||||| || |  |        | |||||||| ||||||||||| ||||| |||||| |    
T  41426581 gccgatatta-tttcttgttcactctttttaattcaattccgacaaa-tgat-aactttttttcgtggcagcaagtccactaccattctggaggtcttgg 41426677  T
Q  203 gctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactccatgtgtttcgaca 302  Q
     ||||||||||||||||||  | ||||| | || |||||||||||||||  |||||||   |||||| |  || |||||||||||||| ||||||| |||    
T  41426678 actcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggcgacgaggatgagatgtggactccaggtgtttcaaca 41426777  T
Q  303 atgccacaggttct 316  Q
    |||| ||| |||||    
T  41426778 atgctacaagttct 41426791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 166 - 316
Target Start/End: Original strand, 41449250 - 41449400
Alignment:
Q  166 catggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcagg 265  Q
    |||||||||| ||||| ||||||||||| || ||| |||||||||||||||||||||| | ||| ||||||| ||||||||||||| |||||||||  ||    
T  41449250 catggcagcaagtccattaccactctggcggccttgggctcaaccctaatttgtatgcttctgggaaagtatccctcagtctacttgacacctggtttgg 41449349  T
Q  266 cgacaaaaatcagatgtggactccatgtgtttcgacaatgccacaggttct 316  Q
    | ||||  ||||||  ||||||||| ||||||| ||||||| |||||||||    
T  41449350 caacaaggatcagaaatggactccaggtgtttcaacaatgctacaggttct 41449400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 41448910 - 41449006
Alignment:
Q  1 agaagggactccttaccatgatggacttttcttttttgatgtttactttcccc-ctggatatcccaatggacccccggtatgtggttgaggatactt 96  Q
    ||||| ||||||||||||| | || |||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  41448910 agaagagactccttaccataacggtcttttcttttttgatgtttactttcccccctggatatcccaatgtacccccagtatgtggttgaggatactt 41449006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 5967 - 6279
Alignment:
Q  1 agaagggactccttaccatgatggacttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttatc 100  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||     
T  5967 agaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatactttatt 6066  T
Q  101 tgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtctt 200  Q
    || | ||  ||| ||||| |||||||| ||| ||||||||||||||||| |||| ||        | |||||||| ||||||||||| ||||| ||||||    
T  6067 tggcagatatta-tttcttgttcactctttttaattcaattccgacaaa-tggt-cactttttttcgtggcagcaagtccactaccattctggaggtctt 6163  T
Q  201 cggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactccatgtgtttcga 300  Q
     |  |||||||||||||||||  | ||||| | || |||||||||||||||  |||||||   |||||| |  || |||||||||||||| ||||||| |    
T  6164 ggagtcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggcgacgaggatgagatgtggactccaggtgtttcaa 6263  T
Q  301 caatgccacaggttct 316  Q
    |||||| ||| |||||    
T  6264 caatgctacaagttct 6279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 17491 - 17179
Alignment:
Q  1 agaagggactccttaccatgatggacttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttatc 100  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||     
T  17491 agaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatactttatt 17392  T
Q  101 tgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtctt 200  Q
    || | ||  ||| ||||| |||||||| ||| ||||||||||||||||| |||| ||        | |||||||| ||||||||||| ||||| ||||||    
T  17391 tggcagatatta-tttcttgttcactctttttaattcaattccgacaaa-tggt-cactttttttcgtggcagcaagtccactaccattctggaggtctt 17295  T
Q  201 cggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactccatgtgtttcga 300  Q
     |  |||||||||||||||||  | ||||| | || |||||||||||||||  |||||||   |||||| |  || |||||||||||||| ||||||| |    
T  17294 ggagtcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggcgacgaggatgagatgtggactccaggtgtttcaa 17195  T
Q  301 caatgccacaggttct 316  Q
    |||||| ||| |||||    
T  17194 caatgctacaagttct 17179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 7763028 - 7762925
Alignment:
Q  3 aagggactccttaccatgatggacttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttatctg 102  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||| ||| |||||||||| ||||||||   |||||||||||    
T  7763028 aagggactccttaccatgatggtcttttcttttttgatttatactttccccctgaatatcccgatgaacccccggtacgtggttgaaactactttatctg 7762929  T
Q  103 actg 106  Q
    ||||    
T  7762928 actg 7762925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 316
Target Start/End: Complemental strand, 7762885 - 7762737
Alignment:
Q  168 tggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcg 267  Q
    ||||||||  || |||||||||||||||||||| ||||||| || ||||||||||    |||| | |||||||||||||||||||||||||||   ||||    
T  7762885 tggcagcaactcgactaccactctggtggtcttgggctcaatccaaatttgtatgaaaatggctatgtatgcctcagtctacttaacacctgggttggcg 7762786  T
Q  268 acaaaaatcagatgtggactccatgtgtttcgacaatgccacaggttct 316  Q
    || |  || |||||||||||||| |||||||||||||||  ||||||||    
T  7762785 acgacgatgagatgtggactccaggtgtttcgacaatgcatcaggttct 7762737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 21223715 - 21223634
Alignment:
Q  181 actaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtc 262  Q
    |||||||||||||||| ||||| |||||||| ||||| |||   ||||||||||| || || || |||||||||||||||||    
T  21223715 actaccactctggtggacttcgactcaacccaaatttatataattgtggcaaagtttgtcttagcctacttaacacctggtc 21223634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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