View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8156_low_1 (Length: 359)
Name: NF8156_low_1
Description: NF8156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8156_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 47782344 - 47782000
Alignment:
| Q |
1 |
actcctattgctaaatcttgaaattccagcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47782344 |
actcctattgctaaatcttgaaattccagcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatat |
47782245 |
T |
|
| Q |
101 |
attgtttcaccactactttgttgagaaggtgattgattattactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatttatagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47782244 |
attgtttcaccactactttgttgagaaggtgattgattattactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatttatagcct |
47782145 |
T |
|
| Q |
201 |
tgcttcttaaatcatttaacagttgtgttactaagatactaagttgatctgccattgttgcgttgttcgagttccacatagtataagctggcccaatttc |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47782144 |
tgcttcttaaatcatttaatagttgtgttactaagatactaagttgatctgccattgttgcgttgttcgagttccacatagtataagctggcccaatttc |
47782045 |
T |
|
| Q |
301 |
gtttaggcctaatatagaacggtctgaataacgtaacatacattt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47782044 |
gtttaggcctaatatagaacggtctgaataacgtaacatgcattt |
47782000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 141 - 345
Target Start/End: Complemental strand, 47788418 - 47788214
Alignment:
| Q |
141 |
tactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatact |
240 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||| | |
|
|
| T |
47788418 |
tactaggacccggcatttttcccacaacatacttacgatgtgagtcaccatttatagccttgcttcttaaatcattcaacaattgttttaccaagatatt |
47788319 |
T |
|
| Q |
241 |
aagttgatctgccattgttgcgttgttcgagttccacatagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacata |
340 |
Q |
| |
|
|| |||||||||||||||||| |||||| ||||||| | |||||| || |||||||||||||| || | ||| |||||||||||||||||||||||| |
|
|
| T |
47788318 |
aaattgatctgccattgttgcattgttcaagttccatgcaaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacata |
47788219 |
T |
|
| Q |
341 |
cattt |
345 |
Q |
| |
|
||||| |
|
|
| T |
47788218 |
cattt |
47788214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 47788517 - 47788415
Alignment:
| Q |
15 |
atcttgaaattccagcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccact |
114 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |
|
|
| T |
47788517 |
atcttgaaacttcagcaatggattgaagcaaacaatcatcacactgtggaccagacaagtcaggagtacactgaacaagaccatatattgtttgatcact |
47788418 |
T |
|
| Q |
115 |
act |
117 |
Q |
| |
|
||| |
|
|
| T |
47788417 |
act |
47788415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 333
Target Start/End: Complemental strand, 47811733 - 47811541
Alignment:
| Q |
141 |
tactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatttatagccttgcttcttaaatcatttaacagttgtgttactaagatact |
240 |
Q |
| |
|
|||||||||| ||| | ||||| ||| ||||||||| ||||||||||||||||||||||||| || |||||||||| |||| |||| ||| | || | |
|
|
| T |
47811733 |
tactaggacctggcaaagttcctacagcatacttacgatgtgagtcaccatttatagccttgttttttaaatcattcaacaattgttttatcacactatt |
47811634 |
T |
|
| Q |
241 |
aagttgatctgccattgttgcgttgttcgagttcca-catagtataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacg |
333 |
Q |
| |
|
| ||||||||||| ||||| |||||| |||||| || | ||| ||| |||| |||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
47811633 |
gaattgatctgccaaagttgcattgttcacgttccaccaaattat-agcaggccacatttcgctgaggcctaatatcgaacggtctgaataacg |
47811541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 47811820 - 47811730
Alignment:
| Q |
27 |
cagcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactact |
117 |
Q |
| |
|
|||||||||||| | |||||| |||||||| |||| | | ||||| ||||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
47811820 |
cagcaatagattcattcaaacagtcatcacactgtgaaaccgacaaatcaggtgtacactgaacaagaccatttattgtttgatcactact |
47811730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 47778356 - 47778303
Alignment:
| Q |
54 |
cacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgttt |
107 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
47778356 |
cacattgtggaccagataaatcaggtgtacactgagcaagaccatatatagttt |
47778303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 47745591 - 47745632
Alignment:
| Q |
68 |
gacaagtcaggtgtacactgaacaagaccatatattgtttca |
109 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
47745591 |
gacaagtcaggtgtacactgcacaagaccatatatggtttca |
47745632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University