View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8156_low_4 (Length: 258)
Name: NF8156_low_4
Description: NF8156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8156_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 28010707 - 28010934
Alignment:
| Q |
14 |
ttggtggtaaagagaccttagtttagttaaacctagtctagctacacttgagcccgaccacttggttatgtactgttttatgatttatattttccttttg |
113 |
Q |
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| T |
28010707 |
ttggtggtaaagagaccttagtttagttaaacctagtctagctacacttgagcccgaccacttggttatgtactgttttatgatttatattttccttttg |
28010806 |
T |
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| Q |
114 |
aaagttttgagcaaattggtttgtctttgtaaattttatgagaaggtacgtagacaaatatattgatgttttttatgttttcagaatcatcaaggaaaca |
213 |
Q |
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| T |
28010807 |
aaagttttgagcaaattggtttgtctttgtaaattttatgagaaggtacgtagacaaatatattgatgttttttatgttttcagaatcatcaaggaaaca |
28010906 |
T |
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| Q |
214 |
tgaatcattttgaaaatgatgatattcc |
241 |
Q |
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| T |
28010907 |
tgaatcattttgaaaatgatgatattcc |
28010934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 27905075 - 27905253
Alignment:
| Q |
59 |
acttgagcccgaccacttggttatgtactgttttatgatttatattttccttttgaaagttttgagc-aaattggtttgt--ctttgtaaattttatgag |
155 |
Q |
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| T |
27905075 |
acttgagcctaaccacttggttatgtactgttttatgatttatattttcgttttgaaa-ttttgagctaaattggtttgtttctttatacatttgctgag |
27905173 |
T |
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| Q |
156 |
aaggtacgtagacaaatatattgatgttttttatgttttcagaatcatcaaggaaacatgaatcattttgaaaatgatga |
235 |
Q |
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| T |
27905174 |
atggtacataggcaaatatattgatgttttttatgttttcagaatcatcaaggaaacatgaatcattttgaaaaagatga |
27905253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 27995241 - 27995388
Alignment:
| Q |
93 |
atgatttatattttccttttgaaagttttgagc-aaattggtttgt-ctttgtaaattttatgagaaggtacgtagacaaatatattgatgttttt--ta |
188 |
Q |
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| T |
27995241 |
atgatttatattttacttttgaaagttgtgatctaaattggttttttctttataaattttctgagatggtacatagacaaatatattgatgtttttaccc |
27995340 |
T |
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| Q |
189 |
tg-ttttcagaatcatcaaggaaacatgaatcattttgaaaatgatga |
235 |
Q |
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| T |
27995341 |
tgtttttcagagtcatcaagaaaacatgaatgattttgaaaaagatga |
27995388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 27927838 - 27927791
Alignment:
| Q |
72 |
cacttggttatgtactgttttatgatttatattttccttttgaaagtt |
119 |
Q |
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| T |
27927838 |
cacttggttatgtactgttttatgatttatattttcccttttaaagtt |
27927791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 28055290 - 28055380
Alignment:
| Q |
152 |
tgagaaggtacgtagacaaatatattgatgttttttatgtttt-cagaatcatcaaggaaacatgaatcattttgaaaatgatgatattcct |
242 |
Q |
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| T |
28055290 |
tgagatggtacatagacaaatatattgatgtttttc-tgtcttacagaatcttgaaggaaacatgaatcattttgataaagatgaaattcct |
28055380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 28055212 - 28055249
Alignment:
| Q |
75 |
ttggttatgtactgttttatgatttatattttcctttt |
112 |
Q |
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| T |
28055212 |
ttggttatgtactgttttatgatttatatttccctttt |
28055249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 28085928 - 28085978
Alignment:
| Q |
191 |
ttttcagaatcatcaaggaaacatgaatcattttgaaaatgatgatattcc |
241 |
Q |
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| T |
28085928 |
ttttcagaatcttgaaggaaacatgaatcattttgacaaagatgaaattcc |
28085978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 28025558 - 28025603
Alignment:
| Q |
195 |
cagaatcatcaaggaaacatgaatcattttgaaaatgatgatattc |
240 |
Q |
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| T |
28025558 |
cagaatcttcaaggaaacatgaatcattttgataaagatgaaattc |
28025603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 1434571 - 1434639
Alignment:
| Q |
159 |
gtacgtagacaaatatattgatgttttttatgtttt-cagaatcatcaaggaaacatgaatcattttga |
226 |
Q |
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| T |
1434571 |
gtacggagacaaatatgttgatgtcttatctatttttcagaatcttctaggaaacatgaatcattttga |
1434639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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