View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8157_high_11 (Length: 284)

Name: NF8157_high_11
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8157_high_11
NF8157_high_11
[»] chr6 (7 HSPs)
chr6 (100-247)||(6825446-6825597)
chr6 (100-250)||(8655766-8655919)
chr6 (188-247)||(6823065-6823124)
chr6 (162-249)||(30689634-30689725)
chr6 (150-238)||(24249778-24249870)
chr6 (106-183)||(787416-787494)
chr6 (162-235)||(4555733-4555810)
[»] scaffold0001 (2 HSPs)
scaffold0001 (100-247)||(146658-146809)
scaffold0001 (162-247)||(144661-144750)
[»] chr8 (7 HSPs)
chr8 (100-249)||(7277687-7277840)
chr8 (109-184)||(3788446-3788522)
chr8 (161-249)||(7275143-7275235)
chr8 (129-183)||(35416056-35416110)
chr8 (150-238)||(13856729-13856821)
chr8 (192-266)||(3567522-3567598)
chr8 (100-175)||(4676285-4676362)
[»] chr5 (7 HSPs)
chr5 (100-250)||(21254194-21254348)
chr5 (150-260)||(26873149-26873262)
chr5 (162-250)||(21256666-21256758)
chr5 (100-186)||(41951668-41951755)
chr5 (163-242)||(4730657-4730741)
chr5 (162-243)||(31339146-31339223)
chr5 (109-175)||(35309093-35309160)
[»] chr2 (4 HSPs)
chr2 (106-249)||(24038310-24038458)
chr2 (161-249)||(31269462-31269554)
chr2 (162-249)||(31180264-31180355)
chr2 (162-249)||(24039505-24039596)
[»] chr1 (6 HSPs)
chr1 (100-250)||(18705645-18705800)
chr1 (100-175)||(9908119-9908194)
chr1 (129-188)||(29849956-29850013)
chr1 (100-187)||(20226759-20226845)
chr1 (107-186)||(35270047-35270127)
chr1 (150-188)||(26231106-26231144)
[»] chr7 (6 HSPs)
chr7 (106-250)||(41830246-41830395)
chr7 (161-249)||(41832653-41832745)
chr7 (100-175)||(34510821-34510896)
chr7 (162-250)||(8083389-8083481)
chr7 (132-177)||(9457775-9457820)
chr7 (181-238)||(23613779-23613836)
[»] chr3 (10 HSPs)
chr3 (107-184)||(20868825-20868902)
chr3 (100-184)||(51306477-51306562)
chr3 (162-238)||(782838-782918)
chr3 (150-238)||(19954439-19954531)
chr3 (100-175)||(52737766-52737842)
chr3 (162-238)||(10018777-10018857)
chr3 (162-238)||(10123317-10123397)
chr3 (162-238)||(10179974-10180054)
chr3 (162-238)||(10256091-10256171)
chr3 (100-142)||(4602423-4602466)
[»] chr4 (5 HSPs)
chr4 (100-187)||(55851929-55852017)
chr4 (162-250)||(2547066-2547158)
chr4 (100-180)||(5440946-5441027)
chr4 (162-238)||(35783779-35783859)
chr4 (198-238)||(5444778-5444818)
[»] scaffold0862 (1 HSPs)
scaffold0862 (161-250)||(268-361)
[»] scaffold0525 (1 HSPs)
scaffold0525 (162-250)||(2028-2120)
[»] scaffold1412 (1 HSPs)
scaffold1412 (100-152)||(1799-1851)
[»] scaffold0023 (1 HSPs)
scaffold0023 (162-250)||(111544-111636)
[»] scaffold0251 (1 HSPs)
scaffold0251 (192-266)||(4646-4719)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 6825446 - 6825597
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaattattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccat----ggatggagagaa 195  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    ||| ||||| ||    
T  6825446 tttctcgagaaaatgcagcggaaaaattgttcaaggtggataccaatcatgctctaataccatgttaggaaacatggcatccatggaaggaaggagataa 6825545  T
Q  196 atctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaa 247  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  6825546 atctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaa 6825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 100 - 250
Target Start/End: Original strand, 8655766 - 8655919
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaattattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccat----ggatggagagaa 195  Q
    |||||||||||||||||  |||||| |  |||||||||| |||||   | ||||||||||||||||||||||||||||||||||    ||| ||||||||    
T  8655766 tttctcgagaaaatgcaagggaaaa-tccttcaaggtgggtaccagataagctctgataccatgttaggaaacatggcatccatagaaggaaggagagaa 8655864  T
Q  196 atctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    | |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  8655865 aactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtt 8655919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 6823065 - 6823124
Alignment:
Q  188 ggagagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaa 247  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  6823065 ggagataaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaa 6823124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 30689634 - 30689725
Alignment:
Q  162 tgttaggaaacatggcatccat----ggatggagagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagt 249  Q
    ||||||||||||||||||||||    |||  |||||||| |||| |||||||||||||||||  ||||| ||||||||||||||||||||||    
T  30689634 tgttaggaaacatggcatccatgaaaggaatgagagaaaactaagaaactctttctattgatgaaagtgaaatattacaaaatgagaaaagt 30689725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 24249870 - 24249778
Alignment:
Q  150 gctctgataccatgttaggaaacatggcatccatg----gatggagagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    ||||||||||||||||||||||||||||||| |||    ||  |||||||| |||||||||||||| |||| || ||| ||||||||||||||    
T  24249870 gctctgataccatgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactctttgtattaatggaaatggaatattacaaa 24249778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 787494 - 787416
Alignment:
Q  106 gagaaaatgcagcggaaaa-attattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccat 183  Q
    ||||||||||||||||||| ||  ||||||||||||||||    ||||||||||||||||||||||||||| |||||||    
T  787494 gagaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 787416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 4555810 - 4555733
Alignment:
Q  162 tgttaggaaacatggcatccatggat----ggagagaaatctaacaaactctttctattgatagaagtggaatattac 235  Q
    |||||||||||||||||||||| |||    ||||  |||||||||||||||||| ||||||||||| || ||||||||    
T  4555810 tgttaggaaacatggcatccatagatcgaaggagcaaaatctaacaaactctttgtattgatagaaatgaaatattac 4555733  T

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Target: scaffold0001 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 146658 - 146809
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaattattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccat----ggatggagagaa 195  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    ||| ||||| ||    
T  146658 tttctcgagaaaatgcagcggaaaaattgttcaaggtggataccaatcatgctttgataccatgttaggaaacatggcatctatagaaggaaggagataa 146757  T
Q  196 atctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaa 247  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  146758 atctaacaaactctttatattgatagaaatggaatattacaaaatgagaaaa 146809  T

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Target: scaffold0001; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 144661 - 144750
Alignment:
Q  162 tgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaa 247  Q
    ||||||||||||||||||| ||||| |||    || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  144661 tgttaggaaacatggcatctatggaaggaaggagataaatctaacaaactctttatattgatagaaatggaatattacaaaatgagaaaa 144750  T

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Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 100 - 249
Target Start/End: Original strand, 7277687 - 7277840
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaattattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccatggat----ggagagaa 195  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     ||||||||    
T  7277687 tttctcgagaaaatgcagcggaaaaattgttcaaggtggataccaatcatgctctgataccatgttaggaaacatggtatccatggaaagaaggagagaa 7277786  T
Q  196 atctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagt 249  Q
    | |||| |||||||||||||||||  || |||||||||||||||||||||||||    
T  7277787 aactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagt 7277840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 3788446 - 3788522
Alignment:
Q  109 aaaatgcagcggaaaaa-ttattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccatg 184  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  3788446 aaaatgcagcggaaaaaattgttcaaggtggataccaatcatgctctgataccatgttgagaaacatggcatccatg 3788522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 7275143 - 7275235
Alignment:
Q  161 atgttaggaaacatggcatccatg----gatggagagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagt 249  Q
    |||||||||||||||| |||||||    || ||||||||| |||| |||||||||||||||||  || |||||||||||||||||||||||||    
T  7275143 atgttaggaaacatggtatccatgaaaagaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagt 7275235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 35416056 - 35416110
Alignment:
Q  129 ttcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccat 183  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  35416056 ttcaaggtggataccaattatgctctgataccatgttaagaaacatggcatccat 35416110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 13856821 - 13856729
Alignment:
Q  150 gctctgataccatgttaggaaacatggcatccatggat----ggagagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    ||||||||||||||||| |||||||| ||||||||||     ||||||||| ||||| ||| |||| ||||||||||| ||||||| ||||||    
T  13856821 gctctgataccatgttatgaaacatgacatccatggaaagaaggagagaaaactaacgaacactttgtattgatagaaatggaatactacaaa 13856729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 3567522 - 3567598
Alignment:
Q  192 agaaatctaacaaactctttctattgatagaagtggaatattacaaaatgag---aaaagttttcctctaatagggtg 266  Q
    |||||||||||||||||||| |||||||  || ||||||||||| |||||||   |||||| | ||||||||||||||    
T  3567522 agaaatctaacaaactctttgtattgatgaaaatggaatattac-aaatgagtgaaaaagtatccctctaatagggtg 3567598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 4676362 - 4676285
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaa--attattcaaggtggataccaatcatgctctgataccatgttaggaaacatg 175  Q
    |||||| ||||||||||||||||||  ||  ||||||||||||||||     ||||||||||||| ||||||||||||    
T  4676362 tttctcaagaaaatgcagcggaaaaatatccttcaaggtggataccaggttagctctgataccatattaggaaacatg 4676285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 100 - 250
Target Start/End: Complemental strand, 21254348 - 21254194
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaattattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccat----ggatggagagaa 195  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||| ||||||||    
T  21254348 tttctcgagaaaatgcagcggaaaaattgttcaaggtggataccaatcatgctatgataccatgttaggaaacatggcatccatggaaggaaggagagaa 21254249  T
Q  196 atctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    |  |||||||||||||||||||||  ||  |||||||||||||||||||||||||    
T  21254248 aagtaacaaactctttctattgatgaaaaaggaatattacaaaatgagaaaagtt 21254194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 26873149 - 26873262
Alignment:
Q  150 gctctgataccatgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaa 245  Q
    ||||||||||||||||||||||||||||||||||||| |||    |||||| |||| ||||||||||||||||| ||| | ||||||||| |||||||||    
T  26873149 gctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatagaatattacgaaatgagaa 26873248  T
Q  246 aagttttcctctaat 260  Q
    ||| |||||||||||    
T  26873249 aag-tttcctctaat 26873262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 21256758 - 21256666
Alignment:
Q  162 tgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    ||||||||||||||||||||||||| |||    |||||| ||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  21256758 tgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtt 21256666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 41951668 - 41951755
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaa-attattcaaggtggatacca-atcatgctctgataccatgttaggaaacatggcatccatgga 186  Q
    ||||||||||||||||||||||||| ||  ||||||| |||||||| || | ||||| |||||||||||||||||||||||||||||||    
T  41951668 tttctcgagaaaatgcagcggaaaatatccttcaaggcggataccagatta-gctctaataccatgttaggaaacatggcatccatgga 41951755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 4730741 - 4730657
Alignment:
Q  163 gttaggaaacatggcatccatggatggag-----agaaatctaacaaactctttctattgatagaagtggaatattacaaaatga 242  Q
    |||||||||||||||||||||||||| ||     | ||| |||||||||||||| ||||||| ||| ||||||||||||||||||    
T  4730741 gttaggaaacatggcatccatggatgaaggagaaaaaaagctaacaaactctttgtattgatggaaatggaatattacaaaatga 4730657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 31339146 - 31339223
Alignment:
Q  162 tgttaggaaacatggcatccatggatggagagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgag 243  Q
    |||||||||||||||||||||   || |||||||| |||| ||||||||||||| ||| ||| | |||||||||||||||||    
T  31339146 tgttaggaaacatggcatcca---at-gagagaaaactaagaaactctttctatcgatggaaattgaatattacaaaatgag 31339223  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 35309093 - 35309160
Alignment:
Q  109 aaaatgcagcggaaaa-attattcaaggtggatacca-atcatgctctgataccatgttaggaaacatg 175  Q
    |||||||||||||||| ||  |||||||||||||||| || | ||||||||||||||||||||||||||    
T  35309093 aaaatgcagcggaaaatatccttcaaggtggataccagatta-gctctgataccatgttaggaaacatg 35309160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 106 - 249
Target Start/End: Complemental strand, 24038458 - 24038310
Alignment:
Q  106 gagaaaatgcagcggaaaa-attattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccatggatg----gagagaaatcta 200  Q
    ||||||||||||||||||| ||  ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| |    |||||||| |||    
T  24038458 gagaaaatgcagcggaaaatatccttcaaggtggataccaaccaggctctgataccatgttagaaaacatggcatccatggaaggaatgagagaaaacta 24038359  T
Q  201 acaaactctttctattgatagaagtggaatattacaaaatgagaaaagt 249  Q
    | ||||| |||||||||||  || ||||||||||||| |||||||||||    
T  24038358 agaaactttttctattgatgaaaatggaatattacaatatgagaaaagt 24038310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 31269462 - 31269554
Alignment:
Q  161 atgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagt 249  Q
    |||||||||||||||||||||||||| |||    |||||| |||| ||||||||||||||||| ||| | |||||||||||||||||||||||    
T  31269462 atgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaattgaatattacaaaatgagaaaagt 31269554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 31180355 - 31180264
Alignment:
Q  162 tgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagt 249  Q
    ||||||||| ||||||||||||||| |||    |||||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  31180355 tgttaggaagcatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagt 31180264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 24039596 - 24039505
Alignment:
Q  162 tgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagt 249  Q
    |||||| |||||||||||||||||| |||    |||||| |||| ||||| |||||||||||  || ||||||||||||| |||||||||||    
T  24039596 tgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattgatgaaaatggaatattacaatatgagaaaagt 24039505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 250
Target Start/End: Original strand, 18705645 - 18705800
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaatta-ttcaaggtggatacca-atcatgctctgataccatgttaggaaacatggcatccatg----gatggagag 193  Q
    |||||| ||||||||||||||||||| |  |||||||||||||||| || | |||||||||||||||||| ||||||||||||||||    || ||||||    
T  18705645 tttctctagaaaatgcagcggaaaaaatccttcaaggtggataccagatta-gctctgataccatgttagaaaacatggcatccatgaaaggaaggagag 18705743  T
Q  194 aaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    ||| |||| |||||||||||||||||  || | ||||||||||||||||||||||||    
T  18705744 aaaactaagaaactctttctattgatgaaaatagaatattacaaaatgagaaaagtt 18705800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 9908119 - 9908194
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaattattcaaggtggatacca-atcatgctctgataccatgttaggaaacatg 175  Q
    |||||| ||||| |||||||||||| || |||||||||||||||| || | ||||||||||||||||||||||||||    
T  9908119 tttctcaagaaagtgcagcggaaaatttcttcaaggtggataccagatta-gctctgataccatgttaggaaacatg 9908194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 29849956 - 29850013
Alignment:
Q  129 ttcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccatggatg 188  Q
    |||||||||||||||| |  |||||||||||||||||| |||||||||||||||||||||    
T  29849956 ttcaaggtggataccatt--tgctctgataccatgttatgaaacatggcatccatggatg 29850013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 20226759 - 20226845
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaattattcaaggtggatacca-atcatgctctgataccatgttaggaaacatggcatccatggat 187  Q
    |||||| |||||||||||||||||| |  ||||||| |||||||| || | |||||||||||||||||||||||| ||||| |||||||    
T  20226759 tttctcaagaaaatgcagcggaaaa-tccttcaaggaggataccagatta-gctctgataccatgttaggaaacacggcattcatggat 20226845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 35270047 - 35270127
Alignment:
Q  107 agaaaatgcagcggaaaa-attattcaaggtggatacc-aatcatgctctgataccatgttaggaaacatggcatccatgga 186  Q
    |||||||||||||||||| || ||||||||||||| || || || |||||||||||||||||  |||||| |||||||||||    
T  35270047 agaaaatgcagcggaaaatatcattcaaggtggatgccaaaccaggctctgataccatgttataaaacat-gcatccatgga 35270127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 26231106 - 26231144
Alignment:
Q  150 gctctgataccatgttaggaaacatggcatccatggatg 188  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  26231106 gctctgatactatgttatgaaacatggcatccatggatg 26231144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 41830395 - 41830246
Alignment:
Q  106 gagaaaatgcagcggaaaa-attattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccatggatgga----gagaaatcta 200  Q
    ||||||||||||||||||| ||  |||||||||||||||||    ||||| |||||||||||||||||||| |||||||||| |||    |||||| |||    
T  41830395 gagaaaatgcagcggaaaatatccttcaaggtggataccaagttagctctaataccatgttaggaaacatgtcatccatggaaggaatgagagaaaacta 41830296  T
Q  201 acaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    | |||||||||||||||||  || | ||||||||||||||||||||||||    
T  41830295 agaaactctttctattgatgtaaattgaatattacaaaatgagaaaagtt 41830246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 41832745 - 41832653
Alignment:
Q  161 atgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagt 249  Q
    |||||||||||||||||||||||||| |||    |||||| |||| |||||||||||||||||  || | |||||||||||||||||||||||    
T  41832745 atgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaattgaatattacaaaatgagaaaagt 41832653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 34510896 - 34510821
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaattattcaaggtggatacca-atcatgctctgataccatgttaggaaacatg 175  Q
    ||||||||||||||||||||||||| |  |||||||||||||||| || | ||||||||||||||||||||||||||    
T  34510896 tttctcgagaaaatgcagcggaaaattccttcaaggtggataccagatta-gctctgataccatgttaggaaacatg 34510821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 8083389 - 8083481
Alignment:
Q  162 tgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    ||||||||||||||||||||||||| |||    |||||| |||| |||||||||||||||||  || || ||||||||||||||| |||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaaactaaaaaactctttctattgatgaaaatgaaatattacaaaatgacaaaagtt 8083481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 9457820 - 9457775
Alignment:
Q  132 aaggtggataccaatcatgctctgataccatgttaggaaacatggc 177  Q
    ||||||||||||||||||||||| |||||||||||| ||| |||||    
T  9457820 aaggtggataccaatcatgctctaataccatgttagaaaatatggc 9457775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 23613836 - 23613779
Alignment:
Q  181 catggatggagagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    |||||| | ||||||| |||||||||||||| ||||||| ||| || |||||||||||    
T  23613836 catggaagtagagaaaactaacaaactctttttattgatggaaatgaaatattacaaa 23613779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 20868902 - 20868825
Alignment:
Q  107 agaaaatgcagcggaaaaattattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccatg 184  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20868902 agaaaatgcagcggaaaattgtttcaaggtggataccaatcatgctctgataccatgttgggaaacatggcatccatg 20868825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 51306562 - 51306477
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaa-ttattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccatg 184  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  51306562 tttcccgagaaaatgcagcggaaaaaattgttcaaggtggataccaatcatgctctgataccatgttgagaaacatgacatccatg 51306477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 782838 - 782918
Alignment:
Q  162 tgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    |||||||||||||| |||||||||| |||    ||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  782838 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattacaaa 782918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 19954439 - 19954531
Alignment:
Q  150 gctctgataccatgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    ||||||||||||||||| |||||||| |||||||||| |||    |||||||||||||| |||||| ||||||| ||| ||||||| ||||||    
T  19954439 gctctgataccatgttatgaaacatgacatccatggaaggaaggagagaaatctaacaatctctttgtattgatggaaatggaataatacaaa 19954531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 52737766 - 52737842
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaa-attattcaaggtggataccaatcatgctctgataccatgttaggaaacatg 175  Q
    |||||| |||||||||||||||||| ||  ||||||||||||||||    |||||||||||||||||||||||||||    
T  52737766 tttctcaagaaaatgcagcggaaaatatccttcaaggtggataccagatttgctctgataccatgttaggaaacatg 52737842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 10018777 - 10018857
Alignment:
Q  162 tgttaggaaacatggcatccatggat----ggagagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    |||||||||||||||||||||||||     ||||||||| |||||||||||||| ||||||| ||| || |||||||||||    
T  10018777 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaa 10018857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 10123317 - 10123397
Alignment:
Q  162 tgttaggaaacatggcatccatg----gatggagagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    |||||||||||||||||||||||    || ||||||||| |||||||||||||| ||||||| ||| || |||||||||||    
T  10123317 tgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaa 10123397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 10179974 - 10180054
Alignment:
Q  162 tgttaggaaacatggcatccatg----gatggagagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    |||||||||||||| ||||||||    || ||||||||| |||||||||||||| ||||||| ||| || |||||||||||    
T  10179974 tgttaggaaacatgacatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaa 10180054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 10256091 - 10256171
Alignment:
Q  162 tgttaggaaacatggcatccatggat----ggagagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    |||||||||||||||||||||||||     ||||||||| |||||||||| ||| ||||||| ||| || |||||||||||    
T  10256091 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactttttgtattgatggaaatgaaatattacaaa 10256171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 4602466 - 4602423
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaatt-attcaaggtggatac 142  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  4602466 tttctcgagaaaatgcagcggaaaaattccttcaaggtggatac 4602423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 55851929 - 55852017
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaa-attattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatccatggat 187  Q
    |||||| |||||||||||||||||| || |||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  55851929 tttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatggat 55852017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 2547158 - 2547066
Alignment:
Q  162 tgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    |||||||||||||| |||||||||| |||    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  2547158 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaagtt 2547066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 5441027 - 5440946
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaa-attattcaaggtggataccaatcatgctctgataccatgttaggaaacatggcatc 180  Q
    |||||||||||||||||| |||||| ||  |||||  |||||||||     |||||||||||||||||||||||||||||||    
T  5441027 tttctcgagaaaatgcaggggaaaatatccttcaaaatggataccaggttagctctgataccatgttaggaaacatggcatc 5440946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 35783859 - 35783779
Alignment:
Q  162 tgttaggaaacatggcatccatggat----ggagagaaatctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    ||||| |||||||||||||||||||     ||||  ||| |||||||||||||| ||||||| ||| ||||||||||||||    
T  35783859 tgttaagaaacatggcatccatggaaagaaggaggaaaaactaacaaactctttgtattgattgaaatggaatattacaaa 35783779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 5444818 - 5444778
Alignment:
Q  198 ctaacaaactctttctattgatagaagtggaatattacaaa 238  Q
    |||||||||||||| ||||||| ||| ||||||||||||||    
T  5444818 ctaacaaactctttgtattgattgaaatggaatattacaaa 5444778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 361 - 268
Alignment:
Q  161 atgttaggaaacatggcatccatg----gatggagagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    ||||||||||||||||||||||||    || ||||||||| |||| |||||||||||||||||  || ||||||||||||||||||||||||||    
T  361 atgttaggaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtt 268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 2028 - 2120
Alignment:
Q  162 tgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    |||| |||||||||||||||||||| |||    |||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  2028 tgttgggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtt 2120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 1799 - 1851
Alignment:
Q  100 tttctcgagaaaatgcagcggaaaaattattcaaggtggataccaatcatgct 152  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1799 tttctcgagaaaatgcagcggaaaaattgttcaaggtggataccaatcatgct 1851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 111544 - 111636
Alignment:
Q  162 tgttaggaaacatggcatccatggatgga----gagaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagtt 250  Q
    ||||||||||||||||||||||||| |||    ||||||| ||| ||||||||| |||||||  || ||||||||||||||||||||||||||    
T  111544 tgttaggaaacatggcatccatggaaggaaggagagaaatttaataaactctttttattgatttaaatggaatattacaaaatgagaaaagtt 111636  T

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Target: scaffold0251 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 4719 - 4646
Alignment:
Q  192 agaaatctaacaaactctttctattgatagaagtggaatattacaaaatgagaaaagttttcctctaatagggtg 266  Q
    ||||| |||| |||||||||||||||||  || || |||||||||||||| |||||  || ||||||||||||||    
T  4719 agaaaactaagaaactctttctattgatgaaaatgaaatattacaaaatg-gaaaaagttccctctaatagggtg 4646  T

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