View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_high_4 (Length: 536)
Name: NF8157_high_4
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 9184192 - 9183670
Alignment:
| Q |
1 |
atacgctcgtaatgaagtgaccttgctccagatgcttgagctcagccagccaacagtaagttggttnnnnnnnnnnnnnnnngctggtctggaagtttaa |
100 |
Q |
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| T |
9184192 |
atacgctcgtaatgaagtgaccttgctccagatgcttgagctcagccagccaacagtaaattggataaaaaaaataaaaaaagctggtctggaagtttaa |
9184093 |
T |
|
| Q |
101 |
tattcgaccgtgagagcttctgggatttagagttaacatttggagactggtgtgttgaatgtattacatgtatcgaaacttggacattatccaactattt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9184092 |
tattcgaccgtgagagcttctgggatttggagttaacatttggagactggtgtgttgaatgtattacatgtatcgaaacttggacattatccaactattt |
9183993 |
T |
|
| Q |
201 |
caatttaaagttcttttttatcagaaaagtgacagtcagttgaagcttgaaggaaaacaaaattttgagaagtatgggacaacattcgtatcaatattac |
300 |
Q |
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| T |
9183992 |
caatttaaagttcttttttatcagaaaagtgacagtcagttgaagcttgaaggaaaacaa-----tgagaagtatgggacaacattagtatcaatattac |
9183898 |
T |
|
| Q |
301 |
attcattcatcagaaagtgccaaagccataattcttttgatgatttcattgatgttcatgtcaaggattgcaaacatactcgatagtgttgcaattccca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9183897 |
attcattcatcagaaagtgccaaagccataattcttttgatgatttcattgatgttcatgtcaaggattgcaaacatactcgatagtgttgcaattccca |
9183798 |
T |
|
| Q |
401 |
agtaccagtggaagtgcgagaatctcccagaggttttaggccttaatacatttgatttgataatatatacaaactaaggctaaggactctctaattcagc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9183797 |
agtaccagtggaagtgcgagaatctcccagaggttttaggccttaatacatttgatttgataatatatacaaactaaggttaaggactctctaattcagc |
9183698 |
T |
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| Q |
501 |
tgtacaacacataattttgcttcatttc |
528 |
Q |
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| T |
9183697 |
tgtacaacacataattttgcttcatttc |
9183670 |
T |
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