View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_high_5 (Length: 503)
Name: NF8157_high_5
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Original strand, 8463440 - 8463900
Alignment:
| Q |
20 |
cggatttaatgtgattgctccgttatgtgtaattgtt-gcattattaaatttaaattattgagtttttagcattattatttttgtaaatatgatcaaata |
118 |
Q |
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| T |
8463440 |
cggatttaatgtcattgctccgttatgtgtaattgtttgcattattaaatttaaattattgagtttttagcattattatttttgtaaatatgatcaaata |
8463539 |
T |
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| Q |
119 |
gttaaatttttgtaatgtgtataattttgcttatatttaagactggatgtagtatctatgaaacactggatccgacacagaaactagacatgacactgac |
218 |
Q |
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| T |
8463540 |
gttaaatttttgtaatgtgtataattttgcttatatttaagactggatgtagtatctatgaaacactggatccgacacagaaactagacatgac------ |
8463633 |
T |
|
| Q |
219 |
actgacacagacacgtcgaaacaaagaaaaaattgttttttggggatacttgtttgttgtatgagttgtgagatacatttgtaagagtgttgtatggatg |
318 |
Q |
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| T |
8463634 |
actgacacagacacgtcgaaacaaataaaaaattgttttttggggatacttgtttgttctatgagttgtgagatacatttgtaagactgttgtatggatg |
8463733 |
T |
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| Q |
319 |
tcatacaccagtgtgtgttggacacggagatatgactaatcacaaaaccttttggaaatagagaagatctttctcgaattcatgaacccattttctgctt |
418 |
Q |
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| T |
8463734 |
tcatacaccagtgtgtgttggacacggagatatgactaatcacaaaaccttttggaaatagagaagatctttctcgaattcatgaacccattttctgctc |
8463833 |
T |
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| Q |
419 |
tttcggagtcatattcccttttcctttcattaatgcagtcagtctggcattgtgatgaatatgttgt |
485 |
Q |
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| T |
8463834 |
tttcggagtcatgttcccttttcctttcattaatgcagtcagtctttcattgtgatgaatatgttgt |
8463900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 23921563 - 23921597
Alignment:
| Q |
193 |
acacagaaactagacatgacactgacactgacaca |
227 |
Q |
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| T |
23921563 |
acacagacactagacatgacactgacactgacaca |
23921597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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