View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_high_6 (Length: 450)
Name: NF8157_high_6
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 12400208 - 12399758
Alignment:
| Q |
1 |
ttttcagcctctaccaacacaggtaatgataggaatcaatttgatgtattggtcaaatttatagaacctacttttattgtataatatgattcaaaatatt |
100 |
Q |
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| T |
12400208 |
ttttcagcctctaccaacacaggtaatgataggaatcaatttgatatattggtcaaatttatagaacctacttttatagtataatatgattcaaaatatt |
12400109 |
T |
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| Q |
101 |
atttatcattttaaccacataatatctttggttgatttgaatattagacttgtaacttaccaaattaatgtgtcacagatgtagtatggagaacattctt |
200 |
Q |
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| T |
12400108 |
atttatcattttaaccacataatatctttggttgatttgaatattagacttgtaacttaccaaattaatgtgtcacagatgtagtatggagaacattctt |
12400009 |
T |
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| Q |
201 |
ctggagatggaccggattttgcgtccgcaaggtagtgtaattttgcgcgacaatgtagatgtgttgacgaaggtgaagagcattgcagatgaaatgcagt |
300 |
Q |
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| T |
12400008 |
ctggagatggaccggattttgcgtccgcaaggtagtgtaattttgcgcgacaatgtagatgtgttgacgaaggtgaagagcattgcagatgaaatgcagt |
12399909 |
T |
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| Q |
301 |
gggatgcaagaattagagaccatgaagaaggaccttatcaaaaagaaaagatacttgtagcagtcaagcaatactggacagctccaccaacagagcaaaa |
400 |
Q |
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| T |
12399908 |
gggatgcaaaaattagagaccatgaagaaggaccttatcaaaaagaaaagatacttgtagcagtcaagcaatactggacagctccaccaacagagcaaaa |
12399809 |
T |
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| Q |
401 |
ctaacacaacaagtattagtttgt-ttttgtttatgacaaaactttcacag |
450 |
Q |
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| T |
12399808 |
ctaacacaacaagtattagtttgttttttgtttatgacaaaactttcacag |
12399758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 387
Target Start/End: Complemental strand, 28637673 - 28637453
Alignment:
| Q |
167 |
aatgtgtcacagatgtagtatggagaacattcttctggagatggaccggattttgcgtccgcaaggtagtgtaattttgcgcgacaatgtagatgtgttg |
266 |
Q |
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| T |
28637673 |
aatgtgtgacagatgtaatatagaggacattcttgttgagatggataggattttaaggccacaagggagtgtgatattgcgtgatgatgtggatgtgttg |
28637574 |
T |
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| Q |
267 |
acgaaggtgaagagcattgcagatgaaatgcagtgggatgcaagaattagagaccatgaagaaggaccttatcaaaaagaaaagatacttgtagcagtca |
366 |
Q |
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| T |
28637573 |
ttgaaggtaaaaagatttgcagatgcaatgcaatgggatgctagaattgcagaccatgaaaagggaccacaccaaagagaaaagatacttgtagcagtca |
28637474 |
T |
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| Q |
367 |
agcaatactggacagctccac |
387 |
Q |
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| T |
28637473 |
agcagtattggacagccccac |
28637453 |
T |
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