View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_high_9 (Length: 402)
Name: NF8157_high_9
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 41249271 - 41248890
Alignment:
| Q |
1 |
aaaaagagcaagacatagtttttcaccgttggggaccatgggagattggattcaagcccgttgatgatcgtccttcatcattcttctcgtctttgctagt |
100 |
Q |
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| T |
41249271 |
aaaaagagcaagacatagtttttcaccgttggggaccatgggagattggattgaagcccgttgatgatcgtccttcattattcttctcttctttgctagt |
41249172 |
T |
|
| Q |
101 |
tacttcattcatggtaaataataatacatcaaccgaaatttgatataggtagttaggaatttgatgtgttactattgacatgaccggtggtatacaatat |
200 |
Q |
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| T |
41249171 |
tacttcactcatggtatataataatacatcaaccgaaatttgatataggtagctagaaatttgatgtgttactattgacatgaccggttgtatacaatat |
41249072 |
T |
|
| Q |
201 |
tattcaatataagctttggtttaagtctatgtttgatgcttttttcgacttgaactccaaaaatgattatttgatttagcaagtgtcaaacctcgctttg |
300 |
Q |
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| T |
41249071 |
tattcaatataagctttggtttaagtcta----tgatgctttttttgacttgaactccaaaaatgattatttgatttagcaagtgtcaaacctcgctttg |
41248976 |
T |
|
| Q |
301 |
ttatccaagagatctaatttaagccatgtatagatgataatgtgtagacatagggttaaatatacattcatattcaattatatatg |
386 |
Q |
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| T |
41248975 |
ttatccaagagatctaatttaagccatgtatagatgataatgtgtagacatagggttaaatatacattcatattcaactatatatg |
41248890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 44984918 - 44985002
Alignment:
| Q |
199 |
attattcaatataagctttggtttaagtctatgtttgatgcttttttcgacttgaactccaaaaatgattatttgatttagcaag |
283 |
Q |
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| T |
44984918 |
attattcaatataagctttggtttaattctatgtttaatactttttccgacgtgcaacccgaaaatgattatttgacttagcaag |
44985002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 48822943 - 48822871
Alignment:
| Q |
206 |
aatataagctttggtttaagtctatgtttgatgcttttttcgacttgaactccaaaaatgattatttgattta |
278 |
Q |
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| T |
48822943 |
aatataagctttggtttaattctataattaatgctttctccgacgtgcaatccgaaaatgattatttgattta |
48822871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 9499435 - 9499367
Alignment:
| Q |
35 |
accatgggagattggattcaagcccgttgatgatcgtccttcatcattcttctcgtctttgctagttac |
103 |
Q |
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| T |
9499435 |
accattggagcttggattcaagcttgttgatgttcctccatcatcattcttctcttctttgctagttac |
9499367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 1819157 - 1819248
Alignment:
| Q |
200 |
ttattcaatataagctttggtttaagtctatgtttgatgcttttttcgacttgaactccaaaaatgattatttgatttagcaagtgtcaaac |
291 |
Q |
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||||||||| ||| |||||||||| | ||| || ||||||||| |||| || | |||||||||||||||||||||||| |||||| |||| |
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| T |
1819157 |
ttattcaatgtaatctttggtttagctatatacttaatgctttttccgacgtgcaatccaaaaatgattatttgatttagaaagtgtgaaac |
1819248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 31999442 - 31999374
Alignment:
| Q |
36 |
ccatgggagattggattcaagcccgttgatgatcgtccttcatcattcttctcgtctttgctagttact |
104 |
Q |
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| T |
31999442 |
ccattggagcttggattcaagattgttgatgctcctccttcaccattcttctcttctttgctagttact |
31999374 |
T |
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