View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_low_1 (Length: 794)
Name: NF8157_low_1
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 28187101 - 28187446
Alignment:
| Q |
18 |
caaactatattgcattgaaaactcgcaagctttaaaatccttccctcaatcaataaaactataaattaaagaacataacattgtaatgcattccctttac |
117 |
Q |
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| T |
28187101 |
caaactacattgcattgaaaactcgcaagctttaaaatccttccctcaatcaataaaactataaattaaagaacataacattgtaatgcattccctttac |
28187200 |
T |
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| Q |
118 |
aagttagatatagacggtgtactatgcagctcccgattatgaactatacaggttctttggtaacttctaatttgattatagtccacagaaaatgactcta |
217 |
Q |
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| T |
28187201 |
aagttagatatagacggtgtactatgcagctcccaattatgaactatacaggttctttggtaacttctaatttgattatagtccacagaaaatgactcta |
28187300 |
T |
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| Q |
218 |
ctaatgatgggggaaagtccctcgctactattttatgtgtgtaatcacggtgagttttaccaaatattatagttttaccaaatgaagcaacnnnnnnnnn |
317 |
Q |
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| T |
28187301 |
ctaatgatgggggaaagtccctcgctactattttatgtgtgtaaccagggtgagttttaccaaatattttagttttaccaaatgaagcaacaaaaaataa |
28187400 |
T |
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| Q |
318 |
nnnntattgttaatgctactggtctctttgcacagccatataactg |
363 |
Q |
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| T |
28187401 |
aaaatattgttaatgctactggtctctttgcacagccatataactg |
28187446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 566 - 778
Target Start/End: Original strand, 28187712 - 28187924
Alignment:
| Q |
566 |
tttaagatcccgaattgaatcaagagaggaaaataccttgaaaatggtgaccctttgggatcaaattgctgagagtaaagccaggaataaaacaaaggaa |
665 |
Q |
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| T |
28187712 |
tttaagatcccgaattgaatcaagaaaggaaaataccttgaaaatggtgacccttttggatcaaattgttgagagtaaagccaggaataaaacgaaggaa |
28187811 |
T |
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| Q |
666 |
gtttacataatgggtgtgaaggtgttgaaaatggaatcaaatgaaagggggaatggaaatcctagagtggatgattgtgtgtgaaattcttatcaagctt |
765 |
Q |
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| T |
28187812 |
gtttacataatgggtgtgaaggtgttgaaaatggaatcaaatgaaagggggaatggaaatcctagagtggatgattgtgtgtgaaattcttatcaagctt |
28187911 |
T |
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| Q |
766 |
tgttgtcacctct |
778 |
Q |
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| T |
28187912 |
tgttgtcacctct |
28187924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 363 - 486
Target Start/End: Original strand, 28187514 - 28187633
Alignment:
| Q |
363 |
gtatcgtgattataacaagctcaatacagtttcaatcaaaatatgcagttaataactaatacagatactggccaataatacaatccaggaatcactctaa |
462 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
28187514 |
gtatcgtgattataacaaaatcaatacagtttcaatcaaaatatgcagttaataa----tacagatactggccaataatacaatccaggaatcacactaa |
28187609 |
T |
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| Q |
463 |
ttctctaacttttttacctccccc |
486 |
Q |
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|||||||||||||||||||||||| |
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| T |
28187610 |
ttctctaacttttttacctccccc |
28187633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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