View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_low_15 (Length: 378)
Name: NF8157_low_15
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 38941958 - 38941607
Alignment:
| Q |
8 |
gaagcagagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactactactggtgagtcatacccctacttgtgaatctgattcttcaggt |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38941958 |
gaagcaaagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactactactggtgagtcatacccctacttgtgaatctgattcttcaggt |
38941859 |
T |
|
| Q |
108 |
ccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcctgtgcatctttcatcggtt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
38941858 |
ccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtt |
38941759 |
T |
|
| Q |
208 |
tctttttcagctccatctgcatagtgatatagatatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38941758 |
tctttttcagctccatctgcatagtgatatagatatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaat |
38941659 |
T |
|
| Q |
308 |
taatattaaaaaaccaaatgcaataggagttaaactactactagtgcgtact |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38941658 |
taatattaaaaaaccaaatgcaataggagttaaactactactagtgcgtact |
38941607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 38942238 - 38941899
Alignment:
| Q |
8 |
gaagcagagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactactactggtgagtcatacccctacttgtgaatctgattcttcaggt |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38942238 |
gaagcaaagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggt |
38942139 |
T |
|
| Q |
108 |
ccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcctgtgcatctttcatcggtt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
38942138 |
ccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtt |
38942039 |
T |
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| Q |
208 |
tctttttcagctccatctgcatagtgatatagatatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942038 |
tctttttcagctccatctgcatagtgatatag--atatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaat |
38941941 |
T |
|
| Q |
308 |
taatattaaaaaaccaaatgcaataggagttaaactactact |
349 |
Q |
| |
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|||||| ||||||||||||||||||| || |||||||||||| |
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| T |
38941940 |
taatatcaaaaaaccaaatgcaatagaagctaaactactact |
38941899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 38942518 - 38942175
Alignment:
| Q |
8 |
gaagcagagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactactactggtgagtcatacccctacttgtgaatctgattcttcaggt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38942518 |
gaagcaaagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactcctactagtgagtcatacccctacttgtgaatctgattcttcaggt |
38942419 |
T |
|
| Q |
108 |
ccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcctgtgcatctttcatcggtt |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
38942418 |
ccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtt |
38942319 |
T |
|
| Q |
208 |
tctttttcagctccatctgcatagtgatatagatatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942318 |
tctttttcagctccatctgcatagtgatatag--atatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaat |
38942221 |
T |
|
| Q |
308 |
taatattaaaaaaccaaatgcaataggagttaaactactactagtg |
353 |
Q |
| |
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|||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
38942220 |
taatatcaaaaaaccaaatgcaatagaagctaaactactactagtg |
38942175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 38942800 - 38942455
Alignment:
| Q |
8 |
gaagcagagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactactactggtgagtcatacccctacttgtgaatctgattcttcaggt |
107 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
38942800 |
gaagcaaagaaaacaaattaatattcaaaaaccaaatgcaatagaagttaaaccactactattgagtcatacccctacttgtgaaactgattcttcaggt |
38942701 |
T |
|
| Q |
108 |
ccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcctgtgcatctttcatcggtt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |
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| T |
38942700 |
ccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacttttttcctcagccttggcttgtgcatctttcatcggtt |
38942601 |
T |
|
| Q |
208 |
tctttttcagctccatctgcatagtgatatagatatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaat |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942600 |
tctttttcagctccatctgcatagtgatatagatatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaat |
38942501 |
T |
|
| Q |
308 |
taatattaaaaaaccaaatgcaataggagttaaactactactagtg |
353 |
Q |
| |
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|||||| ||||||||||||||||||| || |||||| ||||||||| |
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| T |
38942500 |
taatatcaaaaaaccaaatgcaatagaagctaaactcctactagtg |
38942455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 38941602 - 38941498
Alignment:
| Q |
64 |
tactggtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtcc |
163 |
Q |
| |
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|||| ||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
38941602 |
tactagtgagtcgtacccctaattctgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtcttccctttctatctttgaccagttc |
38941503 |
T |
|
| Q |
164 |
atcac |
168 |
Q |
| |
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||||| |
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|
| T |
38941502 |
atcac |
38941498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 350
Target Start/End: Complemental strand, 38942826 - 38942740
Alignment:
| Q |
264 |
taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattaaaaaaccaaatgcaataggagttaaactactacta |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |
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| T |
38942826 |
taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattcaaaaaccaaatgcaatagaagttaaaccactacta |
38942740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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