View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_low_16 (Length: 287)
Name: NF8157_low_16
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 2651125 - 2650873
Alignment:
| Q |
16 |
ggtataacttttgttcatgattttttccattaccaaaagatagcaagtagcaatagtcaactacaacatataacttcgttaggaaggatatactgattag |
115 |
Q |
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| T |
2651125 |
ggtataagttttgttcatgattttttccattaccaaaagatagcaagtagcaatagtcaactacaacatataacttcgttaggaaggatatactgattag |
2651026 |
T |
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| Q |
116 |
tatattataaccaagttttctggnnnnnnntattcaattgcttttaaagtaatttgataacactataatttgagtttattttagaatttgggttgagcat |
215 |
Q |
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| T |
2651025 |
taaattataaccaagttttctggaaaaaaatattcaattgtttttaaag----gttctaa----at-ttttgagtttattttagaatttgggttgagcat |
2650935 |
T |
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| Q |
216 |
aacttgcttttaaagtgaaggaagtctctctccctttaaacatatttttatgtcatattcat |
277 |
Q |
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| T |
2650934 |
aacttgcttttaaagtgaaggaagtctctctccctttaaacatattttcatgtcatattcat |
2650873 |
T |
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