View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8157_low_22 (Length: 254)

Name: NF8157_low_22
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8157_low_22
NF8157_low_22
[»] chr8 (10 HSPs)
chr8 (11-254)||(1962343-1962581)
chr8 (11-155)||(2019231-2019375)
chr8 (11-151)||(2013381-2013522)
chr8 (11-153)||(2015848-2015990)
chr8 (11-132)||(2008834-2008955)
chr8 (11-132)||(1968060-1968181)
chr8 (11-133)||(2005454-2005576)
chr8 (168-252)||(2016016-2016095)
chr8 (26-127)||(2012464-2012565)
chr8 (51-130)||(1964500-1964581)
[»] chr1 (1 HSPs)
chr1 (10-133)||(5901638-5901761)
[»] chr3 (1 HSPs)
chr3 (16-132)||(18189425-18189541)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 1962581 - 1962343
Alignment:
Q  11 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962581 gtgacatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 1962482  T
Q  111 ctgttttctccatgaaaatttgttcttagtttacagcttataagttaatannnnnnnatgcttgtgaaaggaaaaccaaaaacagaactcaactcaacta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||     ||||||||||    
T  1962481 ctgttttctccatgaaaatttgttcttagtttacagcttataagttaatatttttttatgcttgtgaaaggaaaaccaaaaacag-----aactcaacta 1962387  T
Q  211 cctatacatgttctgcaaaatcaacattatgtatatgtttgaga 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1962386 cctatacatgttctgcaaaatcaacattatgtatatgtttgaga 1962343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 2019231 - 2019375
Alignment:
Q  11 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 110  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||    
T  2019231 gtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatccaacacctggaacaactgcaatatgaa 2019330  T
Q  111 ctgttttctccatgaaaatttgttcttagtttacagcttataagt 155  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  2019331 ctgttttctccatgaaaattagttattagtttacagcttataagt 2019375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 2013381 - 2013522
Alignment:
Q  11 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 110  Q
    |||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  2013381 gtgacatgaaagtatggatgaagctgaacaagtagcttcgaaaattgaagaattgggaataagtgactatatccaacacctggaacaactgcaatatgaa 2013480  T
Q  111 ctgttttctccatgaaaatttgtt-cttagtttacagcttat 151  Q
     | ||||||||||| |||||||||  ||||||||||||||||    
T  2013481 tttttttctccatggaaatttgttgtttagtttacagcttat 2013522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 2015848 - 2015990
Alignment:
Q  11 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 110  Q
    |||| |||||||| |||||||||||||||||||   ||||||||||||||||| | ||  || ||||||||||||||||| |||||||||||||||||||    
T  2015848 gtgacatgaaagtttggatgaagctgaacaagtctcttggagaattgaagaatagagaccaaatggctatatccaacacctggaacaactgcaatatgaa 2015947  T
Q  111 ctgttttctccatgaaaatttgttcttagtttacagcttataa 153  Q
     |||||||||||| |||||||||||||||||||| ||||||||    
T  2015948 ttgttttctccataaaaatttgttcttagtttaccgcttataa 2015990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 2008834 - 2008955
Alignment:
Q  11 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 110  Q
    |||| |||||||| |||||||||||||||||||   ||||||||||||||||| ||||  || ||||||||||||||||| |||||||||||||||||||    
T  2008834 gtgacatgaaagtttggatgaagctgaacaagtctcttggagaattgaagaatagggaccaaatggctatatccaacacctggaacaactgcaatatgaa 2008933  T
Q  111 ctgttttctccatgaaaatttg 132  Q
    |||||||||||||| |||||||    
T  2008934 ctgttttctccatggaaatttg 2008955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 1968181 - 1968060
Alignment:
Q  11 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 110  Q
    |||| |||||||| ||||||||| |||||||||   ||||||||||||||||| ||||  || || |||||||||||||| |||||||||||||||||||    
T  1968181 gtgacatgaaagtctggatgaagttgaacaagtctcttggagaattgaagaatagggaccaaatgactatatccaacacctggaacaactgcaatatgaa 1968082  T
Q  111 ctgttttctccatgaaaatttg 132  Q
    |||||||||||||| |||||||    
T  1968081 ctgttttctccatggaaatttg 1968060  T

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Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 2005454 - 2005576
Alignment:
Q  11 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 110  Q
    |||| |||||||| ||||||||| |||||||||   ||||||||||||||||| | ||  || ||||||||||||||||| |||||||||||||||||||    
T  2005454 gtgacatgaaagtttggatgaagttgaacaagtctcttggagaattgaagaatagagaccaaatggctatatccaacacctggaacaactgcaatatgaa 2005553  T
Q  111 ctgttttctccatgaaaatttgt 133  Q
     ||||||||||||| ||| ||||    
T  2005554 ttgttttctccatggaaacttgt 2005576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 2016016 - 2016095
Alignment:
Q  168 atgcttgtgaaaggaaaaccaaaaacagaactcaactcaactacctatacatgttctgcaaaatcaacattatgtatatgtttga 252  Q
    |||||||||||||||||||||||||||||||||| ||     |||| |||||| ||||||||||  ||||||||||| |||||||    
T  2016016 atgcttgtgaaaggaaaaccaaaaacagaactcacct-----acctctacatgctctgcaaaattgacattatgtatgtgtttga 2016095  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 2012464 - 2012565
Alignment:
Q  26 ggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaactgttttctccatga 125  Q
    ||||||||||| | |||||  || ||||| |||||||| |||| |||||| | ||| || ||||| |||||||| ||||| |||| |||||| |||||||    
T  2012464 ggatgaagctggataagtaactttgagaaatgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgttttatccatga 2012563  T
Q  126 aa 127  Q
    ||    
T  2012564 aa 2012565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 1964581 - 1964500
Alignment:
Q  51 agaattgaagaattgggaataagtggctatat--ccaacaccaggaacaactgcaatatgaactgttttctccatgaaaatt 130  Q
    ||||||||||||| | || ||| ||| |||||  |||||||| |||||||||||||| ||||  |||||||||||| |||||    
T  1964581 agaattgaagaatagagactaaatggatatatacccaacacctggaacaactgcaatgtgaatggttttctccatggaaatt 1964500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 5901761 - 5901638
Alignment:
Q  10 agtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatga 109  Q
    ||||| |||||||| |||||| |||||||||||||| |||||||||| |||||| | || ||| |||||||| | | |||| |||| ||| ||||| |||    
T  5901761 agtgacatgaaagtctggatggagctgaacaagtagcttggagaattcaagaatagagactaaatggctataccaagcacctggaataacagcaatgtga 5901662  T
Q  110 actgttttctccatgaaaatttgt 133  Q
    | ||||||||||||||||||||||    
T  5901661 attgttttctccatgaaaatttgt 5901638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 18189541 - 18189425
Alignment:
Q  16 atgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaactgtt 115  Q
    ||||| || ||||||||| || | |||||  || |||||||||||||| |||| |||||| | ||| |||||||| |||||||||||||| |||| ||||    
T  18189541 atgaatgtctggatgaagatggataagtaactttgagaattgaagaatagggactaagtgtccatacccaacacctggaacaactgcaatgtgaattgtt 18189442  T
Q  116 ttctccatgaaaatttg 132  Q
    || |||||| |||||||    
T  18189441 ttatccatggaaatttg 18189425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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