View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_low_23 (Length: 253)
Name: NF8157_low_23
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 12399601 - 12399510
Alignment:
| Q |
147 |
accaactgtgtgtaatatttctccaagttgtcttaatattataatgagtttgaaacaagatatcatcagttcataacacttccccagttcat |
238 |
Q |
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| T |
12399601 |
accaactgtgtgtaatatttctccaagttgtcttaatattataatgagtttgaaacaagatatcatcagttcataacacttccccagttcat |
12399510 |
T |
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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 12399746 - 12399651
Alignment:
| Q |
1 |
tttcaaacagcaattttttgttttggtgcttataagagaaattttgttcattaagttatggcaccttaacatcttgaagcttatcagttatcactct |
97 |
Q |
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| T |
12399746 |
tttcaaacagcaattttttgttt-ggtgcttataagagaaattttgttcattaagttatggcacctcaacatcttgaagcttatcagttatcactct |
12399651 |
T |
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