View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8157_low_24 (Length: 248)

Name: NF8157_low_24
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8157_low_24
NF8157_low_24
[»] chr6 (26 HSPs)
chr6 (5-245)||(21969684-21969919)
chr6 (5-164)||(20193163-20193322)
chr6 (5-164)||(22087186-22087345)
chr6 (14-151)||(20237077-20237214)
chr6 (14-151)||(22131061-22131198)
chr6 (14-120)||(18980842-18980948)
chr6 (14-120)||(18996666-18996772)
chr6 (14-151)||(22205870-22206007)
chr6 (14-120)||(20085138-20085244)
chr6 (180-246)||(11742489-11742555)
chr6 (193-245)||(18102857-18102909)
chr6 (193-245)||(25061821-25061873)
chr6 (180-243)||(11009874-11009937)
chr6 (167-245)||(33730686-33730764)
chr6 (200-245)||(3437973-3438018)
chr6 (180-245)||(4838449-4838514)
chr6 (199-245)||(14488466-14488512)
chr6 (200-245)||(4898426-4898471)
chr6 (169-248)||(4898076-4898155)
chr6 (193-240)||(30525328-30525375)
chr6 (180-245)||(11100227-11100292)
chr6 (193-245)||(5703825-5703877)
chr6 (171-231)||(6322547-6322607)
chr6 (171-231)||(10075050-10075110)
chr6 (171-231)||(15081178-15081238)
chr6 (171-231)||(19104319-19104379)
[»] chr5 (28 HSPs)
chr5 (180-248)||(33832871-33832939)
chr5 (167-248)||(12909970-12910051)
chr5 (167-248)||(28747916-28747997)
chr5 (193-248)||(2695071-2695125)
chr5 (190-245)||(15294194-15294249)
chr5 (193-248)||(39548816-39548871)
chr5 (167-245)||(4738088-4738166)
chr5 (169-243)||(17233224-17233298)
chr5 (180-245)||(4083894-4083959)
chr5 (180-245)||(7944443-7944508)
chr5 (168-245)||(13710980-13711057)
chr5 (180-245)||(17232877-17232942)
chr5 (167-248)||(22800588-22800669)
chr5 (193-245)||(32736416-32736468)
chr5 (171-245)||(33696209-33696283)
chr5 (180-245)||(2528925-2528990)
chr5 (180-245)||(6436579-6436644)
chr5 (180-245)||(17421850-17421915)
chr5 (167-245)||(25911990-25912068)
chr5 (188-245)||(8410599-8410656)
chr5 (180-245)||(14369923-14369988)
chr5 (180-237)||(17210179-17210236)
chr5 (197-245)||(858046-858094)
chr5 (193-245)||(6260965-6261017)
chr5 (193-245)||(9124860-9124912)
chr5 (193-241)||(10471152-10471200)
chr5 (171-231)||(19323741-19323801)
chr5 (193-245)||(31752272-31752324)
[»] chr3 (26 HSPs)
chr3 (170-248)||(33837765-33837843)
chr3 (167-245)||(12127702-12127780)
chr3 (167-245)||(30033171-30033249)
chr3 (167-248)||(3800355-3800436)
chr3 (167-248)||(30685199-30685280)
chr3 (167-245)||(13349296-13349374)
chr3 (167-245)||(50801735-50801813)
chr3 (167-245)||(50874067-50874145)
chr3 (180-245)||(17605634-17605699)
chr3 (180-245)||(54244782-54244847)
chr3 (167-245)||(3269531-3269610)
chr3 (170-245)||(22894503-22894578)
chr3 (167-247)||(8814937-8815017)
chr3 (167-247)||(8815147-8815227)
chr3 (193-245)||(29239573-29239625)
chr3 (194-245)||(1375977-1376028)
chr3 (195-245)||(36824116-36824166)
chr3 (180-245)||(31039523-31039588)
chr3 (171-231)||(36418771-36418831)
chr3 (182-231)||(19228632-19228681)
chr3 (182-231)||(19855533-19855582)
chr3 (168-245)||(32203310-32203387)
chr3 (180-245)||(50912966-50913031)
chr3 (171-231)||(20513073-20513133)
chr3 (171-231)||(27026679-27026739)
chr3 (171-231)||(27038025-27038085)
[»] chr8 (40 HSPs)
chr8 (168-245)||(13269405-13269482)
chr8 (180-245)||(17691176-17691241)
chr8 (167-248)||(2823769-2823850)
chr8 (168-245)||(39922445-39922522)
chr8 (167-243)||(32068970-32069046)
chr8 (167-245)||(30207115-30207193)
chr8 (180-245)||(1201630-1201695)
chr8 (193-245)||(184080-184132)
chr8 (193-245)||(26630003-26630055)
chr8 (193-245)||(34102974-34103026)
chr8 (168-243)||(7977274-7977349)
chr8 (193-248)||(9413782-9413837)
chr8 (180-243)||(10616252-10616315)
chr8 (158-245)||(25127808-25127895)
chr8 (167-245)||(3369660-3369738)
chr8 (194-248)||(23544960-23545014)
chr8 (167-245)||(26868094-26868172)
chr8 (167-245)||(27545708-27545786)
chr8 (194-244)||(29126156-29126206)
chr8 (168-245)||(8258492-8258569)
chr8 (188-245)||(9484091-9484148)
chr8 (180-245)||(10776936-10777001)
chr8 (180-245)||(42556643-42556708)
chr8 (188-245)||(45299758-45299814)
chr8 (193-245)||(7090001-7090053)
chr8 (193-245)||(35066973-35067025)
chr8 (169-245)||(35550762-35550838)
chr8 (193-245)||(36899711-36899763)
chr8 (193-243)||(5946959-5947009)
chr8 (167-245)||(17883914-17883992)
chr8 (167-245)||(29377906-29377984)
chr8 (171-231)||(19922568-19922628)
chr8 (193-245)||(26043111-26043162)
chr8 (180-248)||(32487095-32487163)
chr8 (171-231)||(38498289-38498349)
chr8 (206-245)||(13290483-13290522)
chr8 (206-245)||(30633235-30633274)
chr8 (171-231)||(14041388-14041448)
chr8 (209-245)||(29377561-29377597)
chr8 (193-245)||(34969969-34970021)
[»] chr4 (27 HSPs)
chr4 (167-248)||(16553595-16553676)
chr4 (168-245)||(13211501-13211578)
chr4 (167-248)||(15725349-15725430)
chr4 (167-245)||(20458792-20458870)
chr4 (167-245)||(49606169-49606247)
chr4 (167-245)||(54818630-54818708)
chr4 (193-245)||(23383912-23383964)
chr4 (167-231)||(29102173-29102237)
chr4 (193-245)||(49425746-49425798)
chr4 (193-245)||(52306941-52306993)
chr4 (180-231)||(4505237-4505288)
chr4 (167-245)||(142792-142870)
chr4 (180-245)||(14863140-14863205)
chr4 (193-245)||(6192941-6192993)
chr4 (193-245)||(45875932-45875984)
chr4 (167-246)||(6946812-6946891)
chr4 (197-248)||(14948292-14948343)
chr4 (195-245)||(102235-102285)
chr4 (167-245)||(46106847-46106925)
chr4 (180-245)||(11777469-11777534)
chr4 (180-245)||(26335914-26335979)
chr4 (180-244)||(33811285-33811349)
chr4 (180-243)||(40496615-40496678)
chr4 (193-243)||(36955531-36955581)
chr4 (180-245)||(9744105-9744170)
chr4 (182-231)||(32868053-32868102)
chr4 (155-231)||(43639189-43639265)
[»] chr2 (23 HSPs)
chr2 (168-243)||(768718-768793)
chr2 (167-245)||(33739492-33739570)
chr2 (180-245)||(41528067-41528132)
chr2 (166-245)||(13002193-13002272)
chr2 (167-246)||(29512247-29512326)
chr2 (167-245)||(8386642-8386720)
chr2 (167-245)||(11675097-11675175)
chr2 (167-245)||(34082512-34082590)
chr2 (180-245)||(16513242-16513307)
chr2 (167-248)||(21545831-21545912)
chr2 (195-248)||(42849989-42850042)
chr2 (180-245)||(23387298-23387363)
chr2 (180-245)||(37169515-37169580)
chr2 (197-248)||(29511941-29511992)
chr2 (180-245)||(1576611-1576676)
chr2 (171-231)||(1749954-1750014)
chr2 (180-240)||(32601349-32601409)
chr2 (206-245)||(1750359-1750398)
chr2 (171-236)||(5534320-5534385)
chr2 (167-243)||(18370177-18370253)
chr2 (206-246)||(23664732-23664772)
chr2 (193-245)||(39435202-39435254)
chr2 (180-248)||(44288908-44288976)
[»] scaffold0217 (1 HSPs)
scaffold0217 (167-245)||(20566-20644)
[»] chr1 (39 HSPs)
chr1 (167-245)||(16005736-16005814)
chr1 (190-248)||(28454873-28454931)
chr1 (167-245)||(16073384-16073462)
chr1 (167-245)||(23413806-23413884)
chr1 (180-246)||(24770590-24770656)
chr1 (180-245)||(10558171-10558236)
chr1 (193-245)||(10764770-10764822)
chr1 (193-245)||(26842970-26843022)
chr1 (193-245)||(45818952-45819004)
chr1 (170-245)||(3273504-3273579)
chr1 (182-245)||(20201661-20201724)
chr1 (167-245)||(462964-463042)
chr1 (188-245)||(4158075-4158132)
chr1 (167-245)||(6192370-6192448)
chr1 (195-245)||(13157531-13157581)
chr1 (180-245)||(158373-158438)
chr1 (180-245)||(28764509-28764573)
chr1 (180-245)||(34306399-34306464)
chr1 (180-245)||(41146421-41146486)
chr1 (180-245)||(51432018-51432083)
chr1 (193-245)||(13157253-13157305)
chr1 (180-248)||(36389418-36389486)
chr1 (193-240)||(8643169-8643216)
chr1 (193-248)||(32379604-32379659)
chr1 (193-243)||(27787817-27787867)
chr1 (193-242)||(13264734-13264783)
chr1 (193-245)||(3977944-3977996)
chr1 (171-231)||(7336097-7336157)
chr1 (201-245)||(28704521-28704565)
chr1 (193-245)||(33676185-33676237)
chr1 (193-245)||(34515101-34515153)
chr1 (171-231)||(43939491-43939551)
chr1 (209-248)||(5491590-5491629)
chr1 (206-245)||(42200024-42200063)
chr1 (206-245)||(42208892-42208931)
chr1 (171-225)||(5226857-5226911)
chr1 (193-242)||(32156157-32156206)
chr1 (182-231)||(42470825-42470874)
chr1 (171-231)||(47921618-47921678)
[»] chr7 (22 HSPs)
chr7 (168-245)||(6559526-6559603)
chr7 (180-245)||(9401615-9401680)
chr7 (169-245)||(11766293-11766369)
chr7 (190-245)||(2936813-2936868)
chr7 (190-248)||(2509290-2509348)
chr7 (179-245)||(19069568-19069634)
chr7 (167-245)||(28912254-28912332)
chr7 (180-245)||(939067-939132)
chr7 (193-245)||(454276-454328)
chr7 (193-245)||(15957186-15957238)
chr7 (180-245)||(25818657-25818722)
chr7 (188-245)||(38796790-38796847)
chr7 (171-231)||(3961234-3961294)
chr7 (193-245)||(38367828-38367880)
chr7 (180-245)||(18352274-18352339)
chr7 (193-245)||(23740211-23740263)
chr7 (193-245)||(41407514-41407566)
chr7 (171-231)||(41585917-41585977)
chr7 (182-231)||(5995091-5995140)
chr7 (180-245)||(6736472-6736537)
chr7 (182-231)||(41378409-41378458)
chr7 (193-245)||(2633864-2633916)
[»] scaffold0325 (1 HSPs)
scaffold0325 (168-243)||(6712-6787)
[»] scaffold1808 (1 HSPs)
scaffold1808 (167-245)||(735-813)
[»] scaffold0627 (1 HSPs)
scaffold0627 (193-245)||(4230-4282)
[»] scaffold0007 (1 HSPs)
scaffold0007 (14-64)||(6289-6339)
[»] scaffold0074 (1 HSPs)
scaffold0074 (14-120)||(48700-48803)
[»] scaffold1717 (1 HSPs)
scaffold1717 (193-245)||(1353-1405)
[»] scaffold1527 (1 HSPs)
scaffold1527 (193-245)||(1599-1651)
[»] scaffold0015 (1 HSPs)
scaffold0015 (193-245)||(9705-9757)
[»] scaffold0418 (1 HSPs)
scaffold0418 (180-243)||(5356-5419)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 21969684 - 21969919
Alignment:
Q  5 taaataatccttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaata 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21969684 taaataatacttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaata 21969783  T
Q  105 atagtagggacaacaacggatataattgtccttttctctgcacaaaagcataaatatttacgggggtttgttataatacaccaattaatttttattaagg 204  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||| |||||       |||||| |  ||||||||||||    
T  21969784 atagtagggacaacaatggatataattgtccttttctctgcacaaaagcataaatatttatagggatttgt-----agcaccaactcgtttttattaagg 21969878  T
Q  205 tgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  21969879 tgtgttttagcaaagatataactaaaatgttgttaaataca 21969919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 20193163 - 20193322
Alignment:
Q  5 taaataatccttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaata 104  Q
    |||||||| ||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||    
T  20193163 taaataatacttacaattttctcgaagaatagtcttgcgactctttcttctccatctctttatcaaaaagtagccaatagaaaagagcatcaccaaaata 20193262  T
Q  105 atagtagggacaacaacggatataattgtccttttctctgcacaaaagcataaatattta 164  Q
    ||| |||||||||||| | ||||||||||| | |||||||||||||| ||| ||||||||    
T  20193263 ataatagggacaacaatgaatataattgtcttcttctctgcacaaaaccattaatattta 20193322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 22087186 - 22087345
Alignment:
Q  5 taaataatccttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaata 104  Q
    |||||||| ||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||    
T  22087186 taaataatacttacaattttctcgaagaatagtcttgcgactctttcttctccatctctttatcaaaaagtagccaatagaaaagagcatcaccaaaata 22087285  T
Q  105 atagtagggacaacaacggatataattgtccttttctctgcacaaaagcataaatattta 164  Q
    ||| |||||||||||| | ||||||||||| | |||||||||||||| ||| ||||||||    
T  22087286 ataatagggacaacaatgaatataattgtcttcttctctgcacaaaaccattaatattta 22087345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 20237077 - 20237214
Alignment:
Q  14 cttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaataatagtaggg 113  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| |||| | ||||||| |||||||||  |||||||||||||||| ||| ||||||    
T  20237077 cttacaattttctcgaagaatagtcctacgactctttcttccccttttcttaagcaaatagcagccaatagaaaagagcatcaccaaaacaatggtaggg 20237176  T
Q  114 acaacaacggatataattgtccttttctctgcacaaaa 151  Q
    ||||||| | | |||||| ||  |||||||||||||||    
T  20237177 acaacaatgaagataattttctgtttctctgcacaaaa 20237214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 22131061 - 22131198
Alignment:
Q  14 cttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaataatagtaggg 113  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| |||| | ||||||| |||||||||  |||||||||||||||| ||| ||||||    
T  22131061 cttacaattttctcgaagaatagtcctacgactctttcttccccttttcttaagcaaatagcagccaatagaaaagagcatcaccaaaacaatggtaggg 22131160  T
Q  114 acaacaacggatataattgtccttttctctgcacaaaa 151  Q
    ||||||| | | |||||| ||  |||||||||||||||    
T  22131161 acaacaatgaagataattttctgtttctctgcacaaaa 22131198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 18980842 - 18980948
Alignment:
Q  14 cttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaataatagtaggg 113  Q
    ||||||||||||||||| ||| ||||||||||||||||||| |||| |||| | | |||||||||||||||  || ||||||||| ||||||| ||||||    
T  18980842 cttacaattttctcgaaaaatagtcctacgactctttcttccccttttcttaagccaatagtagccaatagaaaatagcatcaccgaaataattgtaggg 18980941  T
Q  114 acaacaa 120  Q
    |||||||    
T  18980942 acaacaa 18980948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 18996666 - 18996772
Alignment:
Q  14 cttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaataatagtaggg 113  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| |||| | | | |||||||||||||  || ||||||||| ||||||| ||||||    
T  18996666 cttacaattttctcgaagaatagtcctacgactctttcttccccttttcttaagccagtagtagccaatagaaaatagcatcaccgaaataattgtaggg 18996765  T
Q  114 acaacaa 120  Q
    |||||||    
T  18996766 acaacaa 18996772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 22206007 - 22205870
Alignment:
Q  14 cttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaataatagtaggg 113  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| |||| | | ||||||||| |||||  || | ||||||| ||||||| ||||||    
T  22206007 cttacaattttctcgaagaatagtcctacgactctttcttccccttttcttaagccaatagtagctaatagaaaataacatcaccgaaataattgtaggg 22205908  T
Q  114 acaacaacggatataattgtccttttctctgcacaaaa 151  Q
    ||||||| | | | |||| ||| ||| |||||||||||    
T  22205907 acaacaatgaacacaattttccgtttgtctgcacaaaa 22205870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 20085138 - 20085244
Alignment:
Q  14 cttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatcaaatagtagccaatagtgaagagcatcaccaaaataatagtaggg 113  Q
    ||||||||||||||||||||| |||||  |||||||||||| |||| |||| | | |||||||||||||||  || ||||||||| ||||||| ||||||    
T  20085138 cttacaattttctcgaagaatagtcctttgactctttcttccccttttcttaagccaatagtagccaatagaaaatagcatcaccgaaataattgtaggg 20085237  T
Q  114 acaacaa 120  Q
    |||||||    
T  20085238 acaacaa 20085244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 11742555 - 11742489
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacat 246  Q
    ||||||| |||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||||    
T  11742555 atacacccattaatttttattaaggtgtattttagcaaagatataactaaaaagttgttaaatacat 11742489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 18102909 - 18102857
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  18102909 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 18102857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 25061873 - 25061821
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  25061873 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 25061821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 11009874 - 11009937
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    ||||||||| |||||||||||||||| |||| ||| ||| ||||||||||||| ||||||||||    
T  11009874 atacaccaactaatttttattaaggtatgttctagtaaagatataattaaaatattgttaaata 11009937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 33730764 - 33730686
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || ||||||||||||||||||||||| || |||||| ||||| |||||||||||||    
T  33730764 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcgaagatataactaaaaagttgttaaataca 33730686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 3437973 - 3438018
Alignment:
Q  200 taaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||    
T  3437973 taaggtgtgttttagcaaatatataattaaaaagttgttaaataca 3438018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 4838514 - 4838449
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| |||| ||| |||||||||||||||||| ||| |||||| ||||| |||||||||||||    
T  4838514 atacacccattagtttctattaaggtgtgttttagtaaagatataactaaaaagttgttaaataca 4838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 14488512 - 14488466
Alignment:
Q  199 ttaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||||    
T  14488512 ttaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 14488466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 4898426 - 4898471
Alignment:
Q  200 taaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||| |||||| ||||| |||||||||||||    
T  4898426 taaggtgtgttttagcaaagatataactaaaaagttgttaaataca 4898471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 4898076 - 4898155
Alignment:
Q  169 ggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||||  ||||||| | || |||||||||||||||||||||| | | |||||| ||||| |||||  |||||||||    
T  4898076 ggtttgttaggatacacccactagtttttattaaggtgtgttttaggatagatataactaaaaagttgtccaatacatct 4898155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 30525328 - 30525375
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaa 240  Q
    |||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  30525328 tttttattaaggtgtgttttagcaaatatacaactaaaaagttgttaa 30525375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 11100292 - 11100227
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | ||||||||||||| ||||||||||| ||| |||||| ||||  ||||||| |||||    
T  11100292 atacacccactaatttttattaatgtgtgttttagtaaagatataactaaatagttgttacataca 11100227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 5703825 - 5703877
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||| || ||||| |||| |||||| ||||| |||||||||||||    
T  5703825 tttttattaaggagttttttaacaaatatataactaaaaagttgttaaataca 5703877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 6322547 - 6322607
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || |||| ||||||||||||| ||||||| ||||||||||  ||||| |||||    
T  6322547 tttgttaaaaaacacaaattaatttttatgaaggtgtcttttagcaaagttataactaaaa 6322607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 10075050 - 10075110
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || ||||||| |||||||||| ||||||| ||||| ||||  |||||||||||    
T  10075050 tttgttaaaagacaccaactaatttttatgaaggtgtcttttaacaaagttataattaaaa 10075110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 15081178 - 15081238
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || ||||||||||||| |||| ||||||| ||||||||||  ||||| |||||    
T  15081178 tttgttaaaagacaccaattaattgttatgaaggtgtcttttagcaaagttataactaaaa 15081238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 19104379 - 19104319
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || ||||||| |||||||||  ||||||||||||||||||  ||||| |||||    
T  19104379 tttgttaaaagacaccaactaatttttacgaaggtgtgttttagcaaagttataactaaaa 19104319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 33832939 - 33832871
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  33832939 atacacccactaatttttattaaggtgtgttttagcaaaaatataactaaaaagttgttaaatacatct 33832871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 12909970 - 12910051
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||||||  ||||||| | || |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  12909970 ggggtttgttaggatacacccactagtttttattaaggtgtgttttagcaaagatataattaaaaaattgttaaatacatct 12910051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 28747997 - 28747916
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  28747997 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaatacatct 28747916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 2695071 - 2695125
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2695071 tttttattaaggtgtgttttagcaaaa-tataactaaaatgttgttaaatacatct 2695125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 15294249 - 15294194
Alignment:
Q  190 taatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  15294249 taatttttattaaggtgtgttttagcaaagacataattaaaaagttgttaaataca 15294194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 39548816 - 39548871
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  39548816 tttttattaagatgtgttttagcaaagatataattaaaaagttgttaaatacatct 39548871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 4738166 - 4738088
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  4738166 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 4738088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 17233224 - 17233298
Alignment:
Q  169 ggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    |||||||||  ||||||| | ||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||    
T  17233224 ggtttgttaggatacacctactaatttttattaaggtgtgttttagaaaagatataactaaaaagttgttaaata 17233298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 4083959 - 4083894
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  4083959 atacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 4083894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 7944508 - 7944443
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  7944508 atacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 7944443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 13710980 - 13711057
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||  ||||| | | || ||||||||||||||||||||||| || |||||||||||| |||||||||||||    
T  13710980 gggtttgttaggatacatccactagtttttattaaggtgtgttttagctaatatataattaaaaagttgttaaataca 13711057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 17232877 - 17232942
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | |||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||    
T  17232877 atacacctactaatttttattaaggtgtattttagcaaagatataactaaaaagttgttaaataca 17232942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 22800588 - 22800669
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||||||  ||| ||  ||||||||||||||| ||||||||||  ||| |||||||||||| ||||||||||||||||    
T  22800588 ggggtttgttaggataaactcattaatttttattaacgtgtgttttaataaatatataattaaaaagttgttaaatacatct 22800669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 32736468 - 32736416
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  32736468 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 32736416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 33696283 - 33696209
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||  ||||||| | || ||||||||||||||||||||| |||| |||||| ||||| |||||||||||||    
T  33696283 tttgttaggatacacccactagtttttattaaggtgtgttttaacaaagatataactaaaaagttgttaaataca 33696209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 2528990 - 2528925
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||||||||||||| ||  ||||||||||| |||||||||||||    
T  2528990 atacacccactagtttttattaaggtgtgttttagcgaagttataattaaaaagttgttaaataca 2528925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 6436644 - 6436579
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||||| |||||||||| |||||| ||||| |||||||||||||    
T  6436644 atacacccactagtttttattaaggtgtattttagcaaagatataactaaaaagttgttaaataca 6436579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 17421915 - 17421850
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | |||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||||    
T  17421915 atacacccactaatttttattaaggtgtgttttaacaaatatataactaaaaagttgtttaataca 17421850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 25911990 - 25912068
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||| ||||||| |  | ||||||||||||||||||||| |||  |||||| ||||| |||||||||||||    
T  25911990 ggggtttgctatgatacacccaccagtttttattaaggtgtgttttaacaacgatataactaaaaagttgttaaataca 25912068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 8410599 - 8410656
Alignment:
Q  188 attaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||| |||||||||||||||||||||||||| |||||  ||||| ||| |||||||||    
T  8410599 attagtttttattaaggtgtgttttagcaaatatatatctaaaaagttcttaaataca 8410656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 14369988 - 14369923
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||| |||||||||||||||| |||||| ||||| |||||||| ||||    
T  14369988 atacacccactagtttttattatggtgtgttttagcaaagatataactaaaaagttgttaactaca 14369923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 17210236 - 17210179
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgt 237  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||    
T  17210236 atacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgt 17210179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 858094 - 858046
Alignment:
Q  197 tattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||| ||||||||||||||| |||||| ||||| |||||||||||||    
T  858094 tattaaagtgtgttttagcaaagatataactaaaaagttgttaaataca 858046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 6260965 - 6261017
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||| |||| ||||||||||||||||| ||||| || ||||||||||    
T  6260965 tttttattaaagtgtattttagcaaaaatataactaaaaagtggttaaataca 6261017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 9124912 - 9124860
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||| |||||||||||||| |||||| |||||  ||||||||||||    
T  9124912 tttttattaagctgtgttttagcaaagatataactaaaaatttgttaaataca 9124860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 10471200 - 10471152
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaa 241  Q
    ||||||||||||||||||||| |||| |||||  ||||| |||||||||    
T  10471200 tttttattaaggtgtgttttaacaaagatatagctaaaaagttgttaaa 10471152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 19323801 - 19323741
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || |||||||||||||||||| || |||| ||||||||||  ||||| |||||    
T  19323801 tttgttaaaagacaccaattaatttttatgaaagtgtcttttagcaaagttataactaaaa 19323741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 31752324 - 31752272
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||| || |||| |||||| |||||| ||||| |||||||||||||    
T  31752324 tttttattaagatgcgtttaagcaaagatataactaaaaagttgttaaataca 31752272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 33837765 - 33837843
Alignment:
Q  170 gtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||||| ||||||| | || |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  33837765 gtttgttatgatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaatacatct 33837843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 12127780 - 12127702
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||  ||||||| | | ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  12127780 ggggtttgttaggatacacccactgatttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 12127702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 30033249 - 30033171
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||  ||||| | |||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  30033249 ggggtttgttaggatacatccattagtttttattaaggtgtgttttagcaaatatataataaaaaagttgttaaataca 30033171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 3800436 - 3800355
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||||||  ||||||| | || |||||||||||||||||||||||||  |||||| ||||| ||||||||||||||||    
T  3800436 ggggtttgttaggatacacccactagtttttattaaggtgtgttttagcaatgatataactaaaaagttgttaaatacatct 3800355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 30685280 - 30685199
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||||||  |||||||| ||||||||||||||||||| |||||| | || |||||| ||||| ||||||||||||||||    
T  30685280 ggggtttgtttgaatacacccattaatttttattaaggtgcgttttaccgaagatataactaaaaagttgttaaatacatct 30685199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 13349374 - 13349296
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||  ||||||  | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  13349374 ggggtttgttaggatacactcactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 13349296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 50801813 - 50801735
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  50801813 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 50801735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 50874067 - 50874145
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  50874067 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 50874145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 17605699 - 17605634
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  17605699 atacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 17605634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 54244847 - 54244782
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  54244847 atacacctactagtttttattaaggtgtgttttaacaaaaatataactaaaaagttgttaaataca 54244782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 3269610 - 3269531
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtg-ttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  |||| ||||||| |||||||||||||||| ||||| |||| |||||||||||| |||||||||||||    
T  3269610 ggggtttgctaggatacgccaattagtttttattaaggtgtgtttttatcaaagatataattaaaaagttgttaaataca 3269531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 22894503 - 22894578
Alignment:
Q  170 gtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||| ||||| | | || |||||||||||||||||||||||||| |||||| |||||  ||||||||||||    
T  22894503 gtttgttatgatacatccactagtttttattaaggtgtgttttagcaaagatataactaaaaaattgttaaataca 22894578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 8815017 - 8814937
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatc 247  Q
    |||||||| ||  ||||| ||| || ||||||||||||||| |||||||||| |||||| |||||  ||||||||||||||    
T  8815017 ggggtttgctaggatacatcaactagtttttattaaggtgtattttagcaaagatataactaaaaaattgttaaatacatc 8814937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 8815227 - 8815147
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatc 247  Q
    |||||||| ||  ||||| ||| || ||||||||||||||| |||||||||| |||||| |||||  ||||||||||||||    
T  8815227 ggggtttgctaggatacatcaactagtttttattaaggtgtattttagcaaagatataactaaaaaattgttaaatacatc 8815147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 29239573 - 29239625
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| | |||||||||||    
T  29239573 tttttattaaggtgtgttttagcaaagatataactaaaaagctgttaaataca 29239625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 1375977 - 1376028
Alignment:
Q  194 ttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||||||| |||||| |||||  ||||||||||||    
T  1375977 ttttattaaggtgtgttttagcaaagatataactaaaaaattgttaaataca 1376028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 36824166 - 36824116
Alignment:
Q  195 tttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| || |||||||||||| |||||||||||| |||||||||||||    
T  36824166 tttattaaagtatgttttagcaaagatataattaaaaagttgttaaataca 36824116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 31039523 - 31039588
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| |||||  ||||| ||||||    
T  31039523 atacacctactagtttttattaaggtgtgttttagcaaagatataactaaaaatttgttcaataca 31039588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 36418771 - 36418831
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || |||||||||| ||||||| ||||||| ||||||||||  |||||||||||    
T  36418771 tttgttaaaagacaccaattattttttatcaaggtgtcttttagcaaagttataattaaaa 36418831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 19228632 - 19228681
Alignment:
Q  182 acaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| |||||||||| ||||||| ||||| ||||| |||||||||||    
T  19228632 acaccaactaatttttatgaaggtgtcttttaacaaaattataattaaaa 19228681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 19855533 - 19855582
Alignment:
Q  182 acaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| |||||||||| ||||||| ||||||||||| ||||| |||||    
T  19855533 acaccaactaatttttatgaaggtgtcttttagcaaaattataactaaaa 19855582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 32203387 - 32203310
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||  ||||||| |||| |||||||   || ||||||||||||| |||||| |||||  ||||||||||||    
T  32203387 gggtttgttaggatacacccattagtttttatgtcggagtgttttagcaaagatataactaaaaaattgttaaataca 32203310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 50912966 - 50913031
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | ||||||||||   || || ||||||||||||||||| ||||| |||||||||||||    
T  50912966 atacacccactaatttttatgtgggagtattttagcaaaaatataactaaaaagttgttaaataca 50913031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 20513133 - 20513073
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || |||||||||||||||||| ||||||| ||||| ||||  ||||| |||||    
T  20513133 tttgttaaaagacaccaattaatttttatgaaggtgttttttaacaaagttataactaaaa 20513073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 27026739 - 27026679
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || ||||||| |||||||||  ||||||| ||||||||||| ||||| |||||    
T  27026739 tttgttaaaagacaccaactaatttttaggaaggtgtcttttagcaaaattataactaaaa 27026679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 27038085 - 27038025
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || ||||||| | |||||||| ||||||| ||||||||||| ||||| |||||    
T  27038085 tttgttaaaagacaccaactcatttttatgaaggtgtcttttagcaaaattataactaaaa 27038025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 13269482 - 13269405
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||  ||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  13269482 gggtttgttaggatacacccactagtttttattaaggtgtgttttagcgaaaatataattaaaaagttgttaaataca 13269405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 17691176 - 17691241
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  17691176 atacacccactaatttttattaaggtgtgttttagcaaaaatataactaaaaagttgttaaataca 17691241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 2823850 - 2823769
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||| ||  ||||||| | ||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||||||    
T  2823850 ggggtttgctaggatacacccactaatttttattaaagtgtgttttagcaaagatataactaaaaagttgttaaatacatct 2823769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 39922522 - 39922445
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  39922522 gggtttgttaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 39922445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 32068970 - 32069046
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    |||||||| ||  ||||||||| || |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  32068970 ggggtttgctaggatacaccaactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaata 32069046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 30207115 - 30207193
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||  ||||||| | || |||||||||||||||||||||| ||| |||||| ||||| |||||||||||||    
T  30207115 ggggtttgttaggatacacccactagtttttattaaggtgtgttttagtaaatatataactaaaaagttgttaaataca 30207193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 1201630 - 1201695
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||    
T  1201630 atacacccactaatttttattaaggtgtgttttagcaaagatataactaaaaagttgtaaaataca 1201695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 184080 - 184132
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  184080 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 184132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 26630003 - 26630055
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  26630003 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 26630055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 34102974 - 34103026
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  34102974 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 34103026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 7977349 - 7977274
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    ||||||||||  ||||| | | ||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||    
T  7977349 gggtttgttaggatacatccactaatttttattaaggtgtgttttagcaaatatataactaaaaagttattaaata 7977274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 9413782 - 9413837
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||||||||||| ||||||||||||||||| |||||  |||||||||||||||    
T  9413782 tttttattaaggtgtattttagcaaaaatataactaaaaaattgttaaatacatct 9413837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 10616252 - 10616315
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  10616252 atacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaata 10616315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 25127808 - 25127895
Alignment:
Q  158 atatttacgggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||| ||| |||||||| ||  ||||| | ||||||||||||   || |||||||||||||||||||||||||| |||||||||||||    
T  25127808 atatatacaggggtttgctaggatacaaccattaatttttatgtgggagtgttttagcaaaaatataattaaaaagttgttaaataca 25127895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 3369660 - 3369738
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||| ||||| | | || |||||||||||||||||||||||||| |||||  ||||| |||||||||||||    
T  3369660 ggggtttgctatgatacagccactagtttttattaaggtgtgttttagcaaatatatagctaaaaagttgttaaataca 3369738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 23545014 - 23544960
Alignment:
Q  194 ttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  23545014 ttttattaaggtgtgttttagcgaagatataactaaaaagttgttaaatacatct 23544960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 26868172 - 26868094
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| ||| || ||||| |||||||||||||    
T  26868172 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagataaaactaaaaagttgttaaataca 26868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 27545708 - 27545786
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||| ||||||||||||| |||||| ||||| |||||||||||||    
T  27545708 ggggtttgctaggatacacccactagtttttattaaggcgtgttttagcaaagatataactaaaaagttgttaaataca 27545786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 29126206 - 29126156
Alignment:
Q  194 ttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatac 244  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  29126206 ttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaatac 29126156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 8258569 - 8258492
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||  ||||||| | || |||||||||| ||||||||||||||| |||||| |||||  ||||||||||||    
T  8258569 gggtttgttaggatacacccactagtttttattaatgtgtgttttagcaaagatataactaaaaaattgttaaataca 8258492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 9484148 - 9484091
Alignment:
Q  188 attaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||| ||||||||| ||||| |||||| ||||| |||||||||||||    
T  9484148 attaatttttattaaagtgtgttttggcaaatatataactaaaaagttgttaaataca 9484091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 10776936 - 10777001
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | |||||||||||||||||||| ||| |||| |||||| ||||| |||||||||||||    
T  10776936 atacacccactaatttttattaaggtgtgtattaacaaatatataactaaaaagttgttaaataca 10777001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 42556643 - 42556708
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||| |||||||||||||||| |||||| ||||| |||||||||||||    
T  42556643 atacacccactagtttttattagggtgtgttttagcaaagatataactaaaaagttgttaaataca 42556708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 45299814 - 45299758
Alignment:
Q  188 attaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||    
T  45299814 attaatttttattaaggtgtgttttagtaaagatataactaaaa-gttgttaaataca 45299758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 7090053 - 7090001
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||||| || |||||| ||||| |||||||||||||    
T  7090053 tttttattaaggtgtgttttagcgaagatataactaaaaagttgttaaataca 7090001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 35066973 - 35067025
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||||| ||||    
T  35066973 tttttattaaggtgtgttttaacaaatatataattaaaaagttgttaattaca 35067025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 35550838 - 35550762
Alignment:
Q  169 ggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||| ||| ||||| | |||| ||||||||||||||| ||||| |||| |||||| ||||| |||||||||||||    
T  35550838 ggtttgctatgatacatccattagtttttattaaggtgtcttttaacaaagatataagtaaaaagttgttaaataca 35550762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 36899711 - 36899763
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||| ||| |||||| ||||| |||||||||||||    
T  36899711 tttttattaaggtgtgttttagtaaagatataactaaaaagttgttaaataca 36899763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 5947009 - 5946959
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    |||||||||| ||||||||||||||| |||||| ||||| |||||||||||    
T  5947009 tttttattaaagtgtgttttagcaaatatataactaaaaagttgttaaata 5946959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 17883914 - 17883992
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||  ||||||| | || ||||| |||||||||||||||||||| |||||| |||||  |||| |||||||    
T  17883914 ggggtttgttaggatacacccactagtttttgttaaggtgtgttttagcaaagatataactaaaaaattgtaaaataca 17883992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 29377984 - 29377906
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||| ||| |||||| | ||| |||||||||||||    
T  29377984 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagtaaagatataactgaaaagttgttaaataca 29377906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 19922568 - 19922628
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || |||||||||||||||||| ||||||| ||||||||||  ||||| |||||    
T  19922568 tttgttaaaagacaccaattaatttttatgaaggtgtcttttagcaaagttataactaaaa 19922628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 26043162 - 26043111
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||| |||||||||||||| |||||| ||||| |||||||||||||    
T  26043162 tttttattaag-tgtgttttagcaaagatataactaaaaagttgttaaataca 26043111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 32487163 - 32487095
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||| | || ||||||||||||||||| |||  ||| |||||| ||||| ||||||||||||||||    
T  32487163 atacacccactagtttttattaaggtgtgtattaataaatatataactaaaaagttgttaaatacatct 32487095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 38498349 - 38498289
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || |||||||||||||||||| ||||||| ||||||||||  ||||| |||||    
T  38498349 tttgttaaaagacaccaattaatttttatgaaggtgtcttttagcaaagttataactaaaa 38498289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 13290483 - 13290522
Alignment:
Q  206 gtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  13290483 gtgttttagcaaaaataaaattaaaaagttgttaaataca 13290522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 30633274 - 30633235
Alignment:
Q  206 gtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  30633274 gtgttttagcaaaaatataactaaaaagttgttaaataca 30633235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 14041388 - 14041448
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || |||||||||||||||||| ||||||| ||||| ||||  ||||| |||||    
T  14041388 tttgttaaaaaacaccaattaatttttatgaaggtgtcttttaacaaagttataactaaaa 14041448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 29377561 - 29377597
Alignment:
Q  209 ttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||||| || ||||||||||    
T  29377561 ttttagcaaaaatataattaaaaagtggttaaataca 29377597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 34970021 - 34969969
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||| ||| ||||||  |||| ||| |||||||||    
T  34970021 tttttattaaggtgtgttttagtaaagatataaccaaaaagttattaaataca 34969969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 16553676 - 16553595
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||| ||| ||| ||| |||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  16553676 ggggtttgctatgatagacccattagtttttattaaggtgtgttttagcaaatatataactaaaaagttgttaaatacatct 16553595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 13211501 - 13211578
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||  ||||||| | || ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  13211501 gggtttgttaagatacacccactagtttttattaaggtgtgttttaacaaaaatataactaaaaagttgttaaataca 13211578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 15725430 - 15725349
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||||||  ||||||| | || ||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||    
T  15725430 ggggtttgttaggatacacccactagtttttattaaggtgtgttttaacaaagatataactaaaaagttgttaaatacatct 15725349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 20458792 - 20458870
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  20458792 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatatagttaaaaagttgttaaataca 20458870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 49606247 - 49606169
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| |||| ||||||||| |||||||||||||||| |||||| ||||| |||||||||||||    
T  49606247 ggggtttgctaggatacacccattagtttttattagggtgtgttttagcaaagatataactaaaaagttgttaaataca 49606169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 54818708 - 54818630
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  54818708 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaacatataactaaaaagttgttaaataca 54818630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 23383912 - 23383964
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  23383912 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 23383964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 29102237 - 29102173
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    |||||||||||  ||||||  ||||||||||||||||||||||||||||||| |||||| |||||    
T  29102237 ggggtttgttaggatacactcattaatttttattaaggtgtgttttagcaaagatataactaaaa 29102173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 49425746 - 49425798
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  49425746 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 49425798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 52306993 - 52306941
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  52306993 tttttattaaggtgtgttttagcaaatatataactaaaaagttgttaaataca 52306941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 4505237 - 4505288
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  4505237 atacacccactaatttttattaaggtgtgttttagcaaaaatataactaaaa 4505288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 142870 - 142792
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||||| || |||||| ||||||||||||||| ||| |||||| ||||| |||||||||||||    
T  142870 ggggtttgctaggatacaccaactagtttttactaaggtgtgttttaggaaagatataactaaaaagttgttaaataca 142792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 14863205 - 14863140
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||||||||||||||||| ||||| ||||  |||||||||||||    
T  14863205 atacacccactagtttttattaaggtgtgttttagcaaaagtataactaaagagttgttaaataca 14863140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 6192941 - 6192993
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||||||||||||||||| |||||| ||||| |||||||||||||    
T  6192941 tttttatttaggtgtgttttagcaaagatataactaaaaagttgttaaataca 6192993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 45875984 - 45875932
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| |||||  ||||||||||||    
T  45875984 tttttattaaggtgtgttttagcaaagatataactaaaaaattgttaaataca 45875932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 6946891 - 6946812
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacat 246  Q
    |||||||||||  ||||| | | || |||||||||||||||||||| | ||| |||||| ||||| ||||||||||||||    
T  6946891 ggggtttgttaggatacatccactagtttttattaaggtgtgttttggtaaagatataactaaaaagttgttaaatacat 6946812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 14948343 - 14948292
Alignment:
Q  197 tattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||||||||||||| ||| |||||| ||||| ||||||||||||||||    
T  14948343 tattaaggtgtgttttagtaaagatataactaaaaagttgttaaatacatct 14948292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 102235 - 102285
Alignment:
Q  195 tttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||| |||| |||||| ||||| |||||||||||||    
T  102235 tttattaaggtgtgttttaacaaagatataactaaaaagttgttaaataca 102285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 46106925 - 46106847
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||| ||||||||||||||| |||||| |||||  ||||||||||||    
T  46106925 ggggtttgctaggatacacccactagtttttattaaagtgtgttttagcaaagatataactaaaaaattgttaaataca 46106847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 11777469 - 11777534
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||| ||||||||||||  ||||| ||||| |||||||||||||    
T  11777469 atacacccactagtttttattaaggtatgttttagcaaaggtataactaaaaagttgttaaataca 11777534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 26335979 - 26335914
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||||| |||||||||| |||||| |||||  ||||||||||||    
T  26335979 atacacccactagtttttattaaggtgtattttagcaaagatataactaaaaaattgttaaataca 26335914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 33811349 - 33811285
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatac 244  Q
    ||||||| | ||||||||||   || |||||||||||||||||||| ||||| ||||||||||||    
T  33811349 atacacccactaatttttatgtgggagtgttttagcaaaaatataactaaaaagttgttaaatac 33811285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 40496678 - 40496615
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    ||||||| | || ||||||||||||||||||||| |||| |||||| || || |||||||||||    
T  40496678 atacacccactagtttttattaaggtgtgttttaacaaagatataagtataaagttgttaaata 40496615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 36955581 - 36955531
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    |||| ||||||||||||||||||||| |||||| |||||  ||||||||||    
T  36955581 ttttcattaaggtgtgttttagcaaagatataactaaaaaattgttaaata 36955531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 9744105 - 9744170
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||| ||||||||||| ||| |||||| ||||| ||||||| |||||    
T  9744105 atacacccactagtttttattaacgtgtgttttagtaaagatataactaaaaagttgttagataca 9744170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 32868053 - 32868102
Alignment:
Q  182 acaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| |||||||||| ||||||||||||||||||  ||||| |||||    
T  32868053 acaccaactaatttttatgaaggtgtgttttagcaaagttataactaaaa 32868102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 43639265 - 43639189
Alignment:
Q  155 taaatatttacgggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||||||  |||||||||||  ||||||| |||| |||||||   || ||| ||||||||| ||||||||||||    
T  43639265 taaatatttaaaggggtttgttaggatacacccattagtttttatgtgggagtgctttagcaaagatataattaaaa 43639189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 768793 - 768718
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    ||||||||||  ||||||| | || ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  768793 gggtttgttaggatacacccactagtttttattaaggtgtgttttagcaaaaatataactaaaaagttgttaaata 768718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 33739492 - 33739570
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| |||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  33739492 ggggtttgctaggatacacccattagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 33739570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 41528132 - 41528067
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  41528132 atacacccactaatttttattaaggtgtgttttaacaaaaatataactaaaaagttgttaaataca 41528067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 13002272 - 13002193
Alignment:
Q  166 gggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||  ||||| | | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  13002272 gggggtttgttaggatacatccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 13002193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 29512326 - 29512247
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacat 246  Q
    |||||||| ||  ||||||| | ||||||||||||||||||||||||||||| |||||| |||||  |||||||||||||    
T  29512326 ggggtttgctaggatacacctactaatttttattaaggtgtgttttagcaaagatataactaaaaaattgttaaatacat 29512247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 8386642 - 8386720
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||  ||||||| | || |||| ||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  8386642 ggggtttgttaggatacacccactagttttcattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 8386720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 11675097 - 11675175
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  11675097 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 11675175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 34082512 - 34082590
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  34082512 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 34082590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 16513307 - 16513242
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  16513307 atacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 16513242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 21545831 - 21545912
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||| ||  ||||||||| || |||||||||||||| |||||| |||| |||||| |||||| |||||||||||||||    
T  21545831 ggggtttgataggatacaccaactagtttttattaaggtgcgttttaacaaagatataactaaaatattgttaaatacatct 21545912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 42849989 - 42850042
Alignment:
Q  195 tttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  42849989 tttattaaggtgtgttttagcaaagatataactaaaaagttgttaaatacatct 42850042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 23387363 - 23387298
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||||||||||| |||| |||||| ||||| |||||||||||||    
T  23387363 atacacccactagtttttattaaggtgtgttttaacaaagatataactaaaaagttgttaaataca 23387298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 37169515 - 37169580
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||||| |||||||||| |||||| ||||| |||||||||||||    
T  37169515 atacacctactagtttttattaaggtgttttttagcaaagatataactaaaaagttgttaaataca 37169580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 29511941 - 29511992
Alignment:
Q  197 tattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||||||||||||| |||| |||||| ||||| ||||||||||||||||    
T  29511941 tattaaggtgtgttttaacaaagatataactaaaaagttgttaaatacatct 29511992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 1576611 - 1576676
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||| ||| |||||| ||||| |||||| ||||||    
T  1576611 atacacccactagtttttattaaggtgtgttttagtaaagatataactaaaaagttgttgaataca 1576676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 1750014 - 1749954
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || ||||||| |||||||||| ||||||| ||||||||||| ||||| |||||    
T  1750014 tttgttaaaagacaccaactaatttttatgaaggtgtcttttagcaaaattataactaaaa 1749954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 32601349 - 32601409
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaa 240  Q
    ||||||| | || |||||||||||||||||||||||||| ||||||  |||| ||||||||    
T  32601349 atacacccactagtttttattaaggtgtgttttagcaaagatataacaaaaaagttgttaa 32601409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 1750398 - 1750359
Alignment:
Q  206 gtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  1750398 gtgttttagcaaaaatataactaaaaagttgttaaataca 1750359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 5534385 - 5534320
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttg 236  Q
    ||||||| || | |||||||||||||||| ||||| | ||||||||||  ||||||||||| ||||    
T  5534385 tttgttaaaaaataccaattaatttttatgaaggtattttttagcaaagttataattaaaaagttg 5534320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 18370177 - 18370253
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    |||||||| ||  ||||||| | || ||||||||||| ||||||||| |||| |||||| |||||  ||||||||||    
T  18370177 ggggtttgctaagatacacctactagtttttattaagatgtgttttaacaaagatataactaaaaaattgttaaata 18370253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 23664732 - 23664772
Alignment:
Q  206 gtgttttagcaaaaatataattaaaatgttgttaaatacat 246  Q
    ||||||||||||| ||||||||||||  |||||||||||||    
T  23664732 gtgttttagcaaagatataattaaaaaattgttaaatacat 23664772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 39435254 - 39435202
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||   |||||||||||| |||||||||||  |||||||||||||    
T  39435254 tttttattaagccatgttttagcaaagatataattaaagagttgttaaataca 39435202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 44288976 - 44288908
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||| | || ||||||||||  ||| |||||||||| |||||| |||||  |||||||||||||||    
T  44288976 atacacccagtagtttttattaaaatgtattttagcaaagatataactaaaaaattgttaaatacatct 44288908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 20566 - 20644
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || ||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  20566 ggggtttgctaggatacacccagtagtttttattaaggtgtgttttagcaaaaatataactaaaaagttgttaaataca 20644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 16005814 - 16005736
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  16005814 ggggtttgctaggatacacccactaatttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 16005736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 28454931 - 28454873
Alignment:
Q  190 taatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  28454931 taatttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaatacatct 28454873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 16073384 - 16073462
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  16073384 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 16073462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 23413884 - 23413806
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||||| || |||||||||||||||||||||||||| |||||| |||||  ||||||||||||    
T  23413884 ggggtttgctaggatacaccaactagtttttattaaggtgtgttttagcaaatatataactaaaaaattgttaaataca 23413806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 24770590 - 24770656
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacat 246  Q
    ||||||| | || ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  24770590 atacacccactagtttatattaaggtgtgttttagcaaagatataattaaaaagttgttaaatacat 24770656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 10558171 - 10558236
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  10558171 atacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 10558236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 10764822 - 10764770
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  10764822 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 10764770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 26842970 - 26843022
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  26842970 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 26843022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 45819004 - 45818952
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  45819004 tttttattaaggtatgttttagcaaatatataactaaaatgttgttaaataca 45818952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 3273579 - 3273504
Alignment:
Q  170 gtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||  ||||||| | || |||||||||||||||||||||||||| |||||| |||||  ||||||||||||    
T  3273579 gtttgttaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaaattgttaaataca 3273504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 20201661 - 20201724
Alignment:
Q  182 acaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||| |||| ||||||||||||||| |||||||||| |||||| ||||| |||||||||||||    
T  20201661 acacccattagtttttattaaggtgtcttttagcaaagatataactaaaaagttgttaaataca 20201724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 462964 - 463042
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || ||||||||||||||| |||||||||| |||||| ||||| |||||||||||||    
T  462964 ggggtttgctaggatacacccactagtttttattaaggtgtattttagcaaagatataactaaaaagttgttaaataca 463042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 4158075 - 4158132
Alignment:
Q  188 attaatttttattaaggtgtgttttagc-aaaaatataattaaaatgttgttaaataca 245  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  4158075 attagtttttattaaggtgtgttttagcaaaaaatataattaaaa-gttgttaaataca 4158132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 6192370 - 6192448
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||| ||||| |||||| ||||| |||||||||||||    
T  6192370 ggggtttgctaggatacacccactattttttattaaggtgtgttttggcaaagatataactaaaaagttgttaaataca 6192448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 13157531 - 13157581
Alignment:
Q  195 tttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  13157531 tttattaaggcgtcttttagcaaaaatataattaaaaagttgttaaataca 13157581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 158373 - 158438
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| ||| || ||||| |||||||||||||    
T  158373 atacacccactagtttttattaaggtgtgttttagcaaagataaaactaaaaagttgttaaataca 158438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 28764509 - 28764573
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||| |||||  ||||||||||||    
T  28764509 atacaccaactaatttttattaaggtgt-ttttagcaaagatataactaaaaaattgttaaataca 28764573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 34306399 - 34306464
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||| || |||||||||| |||||||||| |||| |||||||||||| |||| ||||||||    
T  34306399 atacaccaactagtttttattaaagtgtgttttaacaaagatataattaaaaagttgctaaataca 34306464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 41146486 - 41146421
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||| ||||||||    
T  41146486 atacacccactagtttttattaaggtgtgttttagcaaatatataactaaaaggttgctaaataca 41146421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 51432083 - 51432018
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||||||||||||| || |||||| ||||| |||||||||||||    
T  51432083 atacacccactagtttttattaaggtgtgttttagcgaagatataactaaaaagttgttaaataca 51432018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 13157253 - 13157305
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||| |||||||||||||| |||||| ||||| |||||||||||||    
T  13157253 tttttattaagttgtgttttagcaaagatataactaaaaagttgttaaataca 13157305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 36389418 - 36389486
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||| | || ||||||||||||||||||| || ||| |||||| ||||| ||||||||||||||||    
T  36389418 atacacctagtagtttttattaaggtgtgtttaagtaaagatataactaaaaagttgttaaatacatct 36389486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 8643216 - 8643169
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaa 240  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||    
T  8643216 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaa 8643169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 32379659 - 32379604
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||||||||| ||||||||||||| || ||| ||||| ||||||||||||||||    
T  32379659 tttttattaaggcgtgttttagcaaagatgtaactaaaaagttgttaaatacatct 32379604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 27787817 - 27787867
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    ||||||||||||||| |||||||||| |||||| ||||| |||||||||||    
T  27787817 tttttattaaggtgtattttagcaaagatataactaaaaagttgttaaata 27787867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 13264734 - 13264783
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaat 242  Q
    |||||||||||||||||||||||||| |||||| |||||  |||||||||    
T  13264734 tttttattaaggtgtgttttagcaaagatataactaaaaaattgttaaat 13264783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 3977944 - 3977996
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||| |||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  3977944 ttttgattaaggtatgttttagcaaagatataactaaaaagttgttaaataca 3977996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 7336157 - 7336097
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || |||||||||||||||||| ||||||| ||||||||||  ||||| |||||    
T  7336157 tttgttaaaagacaccaattaatttttatgaaggtgtcttttagcaaagttataactaaaa 7336097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 28704565 - 28704521
Alignment:
Q  201 aaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||    
T  28704565 aaggtgtgttttagcaaagatataactaaaaagttgttaaataca 28704521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 33676237 - 33676185
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||| ||||| |||| |||||||||| | |||||||||||||    
T  33676237 tttttattaaggtgtattttaacaaagatataattaataagttgttaaataca 33676185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 34515101 - 34515153
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||||| || |||||| ||||| ||||| |||||||    
T  34515101 tttttattaaggtgtgttttagcgaagatataactaaaaagttgtaaaataca 34515153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 43939551 - 43939491
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || |||||||||||||||||| ||||||| ||||| ||||| ||||| |||||    
T  43939551 tttgttaaaagacaccaattaatttttatgaaggtgtcttttaacaaaattataactaaaa 43939491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 5491590 - 5491629
Alignment:
Q  209 ttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  5491590 ttttagcaaaaatataactaaaaagttgttaaatacatct 5491629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 42200063 - 42200024
Alignment:
Q  206 gtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  42200063 gtgttttagcaaaaatataagtaaaaagttgttaaataca 42200024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 42208931 - 42208892
Alignment:
Q  206 gtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  42208931 gtgttttagcaaaaatataagtaaaaagttgttaaataca 42208892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 5226857 - 5226911
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataa 225  Q
    ||||||| || ||||||| |||||||||| ||||||||||||| |||| ||||||    
T  5226857 tttgttaaaaaacaccaactaatttttatgaaggtgtgttttaacaaagatataa 5226911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 32156206 - 32156157
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaat 242  Q
    ||||||||||||||||||||| |||| |||||| |||||  |||||||||    
T  32156206 tttttattaaggtgtgttttaacaaagatataactaaaaaattgttaaat 32156157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 42470825 - 42470874
Alignment:
Q  182 acaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| |||||||||| ||||||| ||||| ||||| |||||||||||    
T  42470825 acaccaactaatttttatgaaggtgtcttttaacaaaattataattaaaa 42470874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 47921618 - 47921678
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || | |||||||||||||||| ||||||| ||||||||||  ||||| |||||    
T  47921618 tttgttaaaagataccaattaatttttatgaaggtgtcttttagcaaagttataactaaaa 47921678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 6559603 - 6559526
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||  ||||||| | ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||    
T  6559603 gggtttgttaggatacacccactaatttttattaaggtgtgttttagcaaagatataactaaaaaattgttaaataca 6559526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 9401615 - 9401680
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  9401615 atacacccactaatttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 9401680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 11766369 - 11766293
Alignment:
Q  169 ggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||  ||||||| | || ||||||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  11766369 ggtttgttaggatacacccactagtttttattaaggtgtattttagcaaagatataattaaaaagttgttaaataca 11766293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 2936868 - 2936813
Alignment:
Q  190 taatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  2936868 taatttttattaaggtgtgttgtagcaaatatataactaaaatgttgttaaataca 2936813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 2509290 - 2509348
Alignment:
Q  190 taatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaatacatct 248  Q
    |||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  2509290 taatttctattaaggtgtgttttagcaaagatataactaaaaagttgttaaatacatct 2509348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 19069634 - 19069568
Alignment:
Q  179 aatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||| || |||||||||||||||||||||| ||| |||||| ||||| |||||||||||||    
T  19069634 aatacaccaactagtttttattaaggtgtgttttagtaaagatataactaaaaagttgttaaataca 19069568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 28912332 - 28912254
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| ||  ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  28912332 ggggtttgctaggatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 28912254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 939132 - 939067
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  939132 atacacccactactttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 939067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 454328 - 454276
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  454328 tttttattaaggtgtgttttagcaaatatataactaaaaagttgttaaataca 454276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 15957186 - 15957238
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  15957186 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 15957238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 25818722 - 25818657
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||| ||||||    
T  25818722 atacacctactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgtttaataca 25818657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 38796790 - 38796847
Alignment:
Q  188 attaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||| ||||||||||| |||||||||||||| |||||| ||||| |||||||||||||    
T  38796790 attagtttttattaagatgtgttttagcaaagatataactaaaaagttgttaaataca 38796847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 3961234 - 3961294
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || ||||||| |||||||||||||||||| ||||||||||| ||||| |||||    
T  3961234 tttgttaaaagacaccaactaatttttattaaggtgttttttagcaaaattataactaaaa 3961294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 38367828 - 38367880
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||| |||| |||||||||| |||||||||||| |||||||||||||    
T  38367828 tttttattaaagtgtattttagcaaagatataattaaaaagttgttaaataca 38367880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 18352274 - 18352339
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || ||||||||||||||||||||||  || |||||| ||||| |||||||||||||    
T  18352274 atacacccactagtttttattaaggtgtgttttagtgaagatataactaaaaagttgttaaataca 18352339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 23740263 - 23740211
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||| ||||||||||||||| |||||| |||||  ||||||||||||    
T  23740263 tttttattaatgtgtgttttagcaaagatataactaaaaaattgttaaataca 23740211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 41407566 - 41407514
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| ||| || ||||| ||||||| |||||    
T  41407566 tttttattaaggtgtgttttagcaaatatacaactaaaaagttgttatataca 41407514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 41585977 - 41585917
Alignment:
Q  171 tttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| || ||||||| |||||||||| ||||||| ||||||||||| ||||| |||||    
T  41585977 tttgttaaaagacaccaactaatttttatgaaggtgtcttttagcaaaattataactaaaa 41585917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 5995140 - 5995091
Alignment:
Q  182 acaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    ||||||| |||||||||| ||||||| ||||||||||| ||||| |||||    
T  5995140 acaccaactaatttttatgaaggtgtcttttagcaaaattataactaaaa 5995091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 6736472 - 6736537
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||| | || |||||| ||||||||||||||||||| |||||| |||||  ||||||| ||||    
T  6736472 atacacccactagtttttactaaggtgtgttttagcaaagatataactaaaaaattgttaactaca 6736537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 41378458 - 41378409
Alignment:
Q  182 acaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaa 231  Q
    |||||||||||||||||| ||||||| ||||||||||  ||||| |||||    
T  41378458 acaccaattaatttttatgaaggtgtcttttagcaaagttataactaaaa 41378409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 2633864 - 2633916
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||| |||||||||||| | ||||||  |||| |||||||||||||    
T  2633864 tttttattaagatgtgttttagcatagatataacgaaaaagttgttaaataca 2633916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 6787 - 6712
Alignment:
Q  168 gggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    ||||||| ||| ||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  6787 gggtttgctatgatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaata 6712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1808 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 813 - 735
Alignment:
Q  167 ggggtttgttataatacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||| || |||||||| | || |||||||||||||||||||||||||| |||||| ||||| |||||||| ||||    
T  813 ggggtttgctagaatacacccactagtttttattaaggtgtgttttagcaaagatataactaaaaagttgttaattaca 735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 4282 - 4230
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  4282 tttttattaaggtgtgttttagcaaagatataactaaaaagttgttaaataca 4230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 6339 - 6289
Alignment:
Q  14 cttacaattttctcgaagaatggtcctacgactctttcttctccttctctt 64  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  6339 cttacaattttctcgaagaatagtcctacgactctttcttccccttttctt 6289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 48803 - 48700
Alignment:
Q  14 cttacaattttctcgaagaatggtcctacgactctttcttctccttctctttatca-aatagtagccaatagtgaagagcatcaccaaaataatagtagg 112  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||| || |||| | || ||||||||  |   || ||||||||||||||||| |||||    
T  48803 cttacaattttctctaagaatagtcctacgactctttcttccccttttc-ttatgacaacagtagccacaa---aatagcatcaccaaaataattgtagg 48708  T
Q  113 gacaacaa 120  Q
    ||||||||    
T  48707 gacaacaa 48700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1717 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1717
Description:

Target: scaffold1717; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 1353 - 1405
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||||| || |||||| ||||| |||||||||||||    
T  1353 tttttattaaggtgtgttttagcgaagatataactaaaaagttgttaaataca 1405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1527 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1527
Description:

Target: scaffold1527; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 1599 - 1651
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    ||||||||||||||||||||||| || |||||| ||||| |||||||||||||    
T  1599 tttttattaaggtgtgttttagcgaagatataactaaaaagttgttaaataca 1651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 9705 - 9757
Alignment:
Q  193 tttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaataca 245  Q
    |||||||||||||||||||||| ||| |||||| ||||| |||||||||||||    
T  9705 tttttattaaggtgtgttttagtaaagatataactaaaaagttgttaaataca 9757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 5356 - 5419
Alignment:
Q  180 atacaccaattaatttttattaaggtgtgttttagcaaaaatataattaaaatgttgttaaata 243  Q
    ||||||| | || ||||||||||||||||||||| |||| |||||| || || |||||||||||    
T  5356 atacacccactagtttttattaaggtgtgttttaacaaagatataagtataaagttgttaaata 5419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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