View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_low_25 (Length: 239)
Name: NF8157_low_25
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 16895378 - 16895582
Alignment:
| Q |
19 |
ttaataacagcaccagcagcaagataaagagtcatatgactagtaagattgaagctctccgttaagtacacaccaggaggcacataaaggagcgtgccac |
118 |
Q |
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| T |
16895378 |
ttaataacagcaccagcagcaagataaagagtcatatgactagtaagattgaagctctccgttaagtacacaccaggaggcacataaaggagcgtgccac |
16895477 |
T |
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| Q |
119 |
cacgtctccttaagtgctgaatcctataaatagctgccctaaatgcctttgagttcagcgttttgccgtcgccgacgccaccaaaatcggttatggaaat |
218 |
Q |
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| T |
16895478 |
cacgtcttcttaagtgctgaatcctataaatagctgctctgaatgcctttgagttcagggttttgccgtctccgacaccgccgaaatcagttatggaaat |
16895577 |
T |
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| Q |
219 |
cgtgt |
223 |
Q |
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||||| |
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| T |
16895578 |
cgtgt |
16895582 |
T |
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Back To:
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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 39274916 - 39274966
Alignment:
| Q |
22 |
ataacagcaccagcagcaagataaagagtcatatgactagtaagattgaag |
72 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39274916 |
ataacagcaccagcagcaagatgaagagtcatatgactagtaagattgaag |
39274966 |
T |
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