View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8157_low_3 (Length: 565)

Name: NF8157_low_3
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8157_low_3
NF8157_low_3
[»] chr6 (9 HSPs)
chr6 (13-549)||(11947465-11948004)
chr6 (41-549)||(11935517-11936024)
chr6 (237-469)||(14667689-14667921)
chr6 (246-454)||(17716640-17716848)
chr6 (13-228)||(14667379-14667594)
chr6 (245-366)||(19851475-19851596)
chr6 (13-96)||(17716325-17716408)
chr6 (121-228)||(17716407-17716517)
chr6 (255-322)||(19851620-19851687)
[»] chr3 (3 HSPs)
chr3 (13-549)||(1657597-1658114)
chr3 (374-469)||(2554281-2554376)
chr3 (57-110)||(2554492-2554545)
[»] chr5 (8 HSPs)
chr5 (13-469)||(23758964-23759414)
chr5 (13-469)||(23824424-23824874)
chr5 (13-400)||(23758375-23758758)
chr5 (13-400)||(23823832-23824215)
chr5 (13-228)||(24046286-24046504)
chr5 (237-417)||(24045988-24046171)
chr5 (414-469)||(24045118-24045173)
chr5 (479-532)||(32268622-32268675)
[»] chr8 (12 HSPs)
chr8 (246-549)||(28245742-28246044)
chr8 (187-469)||(45350088-45350370)
chr8 (13-228)||(28245400-28245618)
chr8 (247-342)||(19450465-19450560)
chr8 (247-342)||(19530516-19530611)
chr8 (253-342)||(19359019-19359108)
chr8 (13-102)||(45349971-45350060)
chr8 (247-322)||(5531825-5531900)
chr8 (397-469)||(19449481-19449553)
chr8 (397-469)||(19531523-19531595)
chr8 (293-366)||(5531916-5531989)
chr8 (57-110)||(19358835-19358888)
[»] chr7 (5 HSPs)
chr7 (237-442)||(9239034-9239239)
chr7 (14-228)||(9238702-9238919)
chr7 (390-469)||(9240232-9240311)
chr7 (387-430)||(9239251-9239294)
chr7 (120-159)||(9240190-9240229)
[»] chr4 (8 HSPs)
chr4 (466-549)||(645177-645259)
chr4 (374-469)||(43602870-43602965)
chr4 (404-469)||(1154390-1154455)
chr4 (247-322)||(1155306-1155381)
chr4 (57-110)||(1155506-1155559)
chr4 (57-110)||(43603081-43603134)
chr4 (479-518)||(1524234-1524273)
chr4 (477-540)||(1545943-1546006)


Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 549
Target Start/End: Original strand, 11947465 - 11948004
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgttt-gagttatgaatcgaaattaacttc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  11947465 gttgccaaagaataagaaattatcctagagtggattggtggatttgttataaattaaaatttaactcaatttttttgagttatgaatcgaaattaacttc 11947564  T
Q  112 acagtcgc---agatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattgnnnnnnnn-gttgtttagaatttgctgatt 207  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||||||| |||||||||||||    
T  11947565 acagtcgccgcagatccatgattttcattcgcaatttaactcaatttttgttccagtggatttgtgattgaaaaaaaaagttgtttggaatttgctgatt 11947664  T
Q  208 actcttcaaactcaattttgtannnnnnngaaatttgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaa 307  Q
    ||||||||||||||||||||||        |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11947665 actcttcaaactcaattttgtatttttttaaaatctgtgtttgattgatgttgccgcgtgtgtaagtataagaaatttaactgaagttttgtgttgagaa 11947764  T
Q  308 gtagtagtaattaatgagtagtgtgtcgacatgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaa 407  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11947765 gtagtagtaattaatgagta-tgtgtcgacatgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagaaaatgaa 11947863  T
Q  408 atagttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttactcgggtttacctcaacaagcttctatgccaaatctctag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  11947864 atagttttagatatagtaatgaattgttctagatttagactatggtattaagctttgttactcggg-ttacctcaacaagcttctatgccaaatctctag 11947962  T
Q  508 ttttccattgaggctcacatcactcgttttttcagtgcaaac 549  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  11947963 ttttccattgagactcacatcactcgttttttcagtgcaaac 11948004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 41 - 549
Target Start/End: Original strand, 11935517 - 11936024
Alignment:
Q  41 agtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttcacagtcgcagatccatgattttcattcgc 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11935517 agtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttcacagttgcagatccatgattttcattcgc 11935616  T
Q  141 aatttaactcaatttttgttctagtggatttgtgattgnnnnnnnn-gttgtttagaatttgctgattactcttcaaactcaattttgtannnnnnngaa 239  Q
    ||||||||||||||||||||| ||||||||||||||||         ||||||| |||||||||||||||||||||||||||||||||||        ||    
T  11935617 aatttaactcaatttttgttccagtggatttgtgattgaaaaaaaaagttgtttggaatttgctgattactcttcaaactcaattttgtatttttttaaa 11935716  T
Q  240 atttgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacat 339  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11935717 atctgtgtttgattgatgttgccgcgtgtgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagta-tgtgtcgacat 11935815  T
Q  340 gttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaaatagttttagatatagtaatgaattgttctag 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11935816 gttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagaaaatgaaatagttttagatatagtaatgaattgttctag 11935915  T
Q  440 atttagactatggtattaagcgttgttactcgggtttacctcaacaagcttctatgccaaatctctagttttccattgaggctcacatcactcgtttttt 539  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11935916 atttagactatggtattaagctttgttactcggg-ttacctcaacaagcttctatgccaaatctctagttttccattgagactcacatcactcgtttttt 11936014  T
Q  540 cagtgcaaac 549  Q
    ||||||||||    
T  11936015 cagtgcaaac 11936024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 237 - 469
Target Start/End: Original strand, 14667689 - 14667921
Alignment:
Q  237 gaaatttgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcga 336  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14667689 gaaatctgtgtttgattgatgttgccgcgtgcgtaagtaaaagaaatttaactgaagttttgtgttgagaagtagtagtagttaatgagtagtgtgtcga 14667788  T
Q  337 catgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaaatagttttagatatagtaatgaattgttc 436  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14667789 catgtcagtgtttgtttttcataaaaatgagtttgtaattttaagctttgttacatgaggcagagaatgaaatagttttagatatagtaatgaattgttc 14667888  T
Q  437 tagatttagactatggtattaagcgttgttact 469  Q
    |||||||||||||||||||||||| ||||||||    
T  14667889 tagatttagactatggtattaagctttgttact 14667921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 246 - 454
Target Start/End: Original strand, 17716640 - 17716848
Alignment:
Q  246 gtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacatgttagt 345  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17716640 gtttgattgatgttttcgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgttgacatgttagt 17716739  T
Q  346 gtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaaatagttttagatatagtaatgaattgttctagatttag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  17716740 gtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagagaatgaaatagttttagatatagtgatgaattgttctagatttag 17716839  T
Q  446 actatggta 454  Q
    |||||||||    
T  17716840 actatggta 17716848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 14667379 - 14667594
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 112  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14667379 gttgccaaagaataacaaattatcctagagtggattagtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 14667478  T
Q  113 cagtcgcagatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattgnnnnnnnngttgtttagaatttgctgattactct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||||||    
T  14667479 cagtcgcagatccatgattttcattcgcaatttaactcaatttttgttccagtggatttgtgattgaaaaaaaagttgtttagaatttgctgattactct 14667578  T
Q  213 tcaaactcaattttgt 228  Q
    ||||||||||||||||    
T  14667579 tcaaactcaattttgt 14667594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 245 - 366
Target Start/End: Original strand, 19851475 - 19851596
Alignment:
Q  245 tgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacatgttag 344  Q
    |||||| |||||||||||||  ||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||  |||||  |    
T  19851475 tgtttgtttgatgttgccgcaggcgtaagtatatgaaatgtaactgaagttttatgttgagaagtagtagtgattaatgagtagtgtgtctgcatgtccg 19851574  T
Q  345 tgtttgttgttcatagaaatga 366  Q
    ||||||||||||||||||||||    
T  19851575 tgtttgttgttcatagaaatga 19851596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 17716325 - 17716408
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatga 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  17716325 gttgccaaagaataagaaattatcctagagtggattggtggatttgttataaattgaaatttaactcaattttttgagttatga 17716408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 17716407 - 17716517
Alignment:
Q  121 gatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattg---nnnnnnnngttgtttagaatttgctgattactcttcaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||           ||||||||||||||| |||||||||||||||    
T  17716407 gatccatgattttcattcgcaatttaactcaatttttgttccagtggatttgtgattgaaagaaaaaaagttgtttagaatttgttgattactcttcaaa 17716506  T
Q  218 ctcaattttgt 228  Q
    |||||||||||    
T  17716507 ctcaattttgt 17716517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 19851620 - 19851687
Alignment:
Q  255 atgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaat 322  Q
    |||||||||| || |||||||||||||| || ||| ||||||| ||||||||||||||||||||||||    
T  19851620 atgttgccgcatgtgtaagtataagaaacttgacttaagttttatgttgagaagtagtagtaattaat 19851687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 549
Target Start/End: Complemental strand, 1658114 - 1657597
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1658114 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagtt-tgaatcgaaattaacttca 1658016  T
Q  113 cagtcgcagatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattgnnnnnnnngttgtttagaatttgctgattactct 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||        ||||||||||||||||||||||||||    
T  1658015 cagtcgtagatccatgattttcattcgcaatttaactcaatttttgttctagtggatctatgattgaaaaaaaagttgtttagaatttgctgattactct 1657916  T
Q  213 tcaaactcaattttgtannnnnnngaaatttgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagt 312  Q
    |||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657915 tcaaactcaattttgtatttttttgaaatctgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagt 1657816  T
Q  313 agtaattaatgagtagtgtgtcgacatgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaaatagt 412  Q
    |||||| |                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1657815 agtaataa------------------tgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagagaatgaaatagt 1657734  T
Q  413 tttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttactcgggtttacctcaacaagcttctatgccaaatctctagttttc 512  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657733 tttagatatagtaatcaattgttctagatttagactatggtattaagttttgttactcgggtttacctcaacaagcttctatgccaaatctctagttttc 1657634  T
Q  513 cattgaggctcacatcactcgttttttcagtgcaaac 549  Q
    ||||||| |||||||||||||||||||||||||||||    
T  1657633 cattgagactcacatcactcgttttttcagtgcaaac 1657597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 374 - 469
Target Start/End: Complemental strand, 2554376 - 2554281
Alignment:
Q  374 attttaagctttgttacatgaggcagataatgaaatagttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    |||||||| ||||||  |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||  |||||| |||||| ||||||||    
T  2554376 attttaagatttgtttgatgaggcagagaatgacatagttttagatatagtgatgaattgttctagatttagtttatggtgttaagctttgttact 2554281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 2554545 - 2554492
Alignment:
Q  57 tgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaactt 110  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  2554545 tgttatgaattgcaatttaactcaattttttgagttatgaatcgaaattaactt 2554492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Original strand, 23758964 - 23759414
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23758964 gttgccaaagaataagaaattgtcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtatgagttatgaatcgaaattaacttca 23759063  T
Q  113 cagtcgcagatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattg-nnnnnnnngttgtttagaatttgctgattactc 211  Q
    |||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||||||||||||||||    
T  23759064 cagtcgcatatccat-aatttcattcgcaatttaactcaatttttgttccagtggatttgtgattgaaaaaaaaagttgtttagaatttgctgattactc 23759162  T
Q  212 ttcaaactcaattttgtannnnnnngaaatttgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtag 311  Q
    ||||||||||||||| ||       ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23759163 ttcaaactcaattttttatttttttgaaatctttgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtag 23759262  T
Q  312 tagtaattaatgagtagtgtgtcgacatgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaaatag 411  Q
    |||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23759263 tagtaattaatgagtagtgtg------tgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagaaaatgaaatag 23759356  T
Q  412 ttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23759357 ttttagatatagtaatgaattgttctagatttagactatggtattaagctttgttact 23759414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Original strand, 23824424 - 23824874
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23824424 gttgccaaagaataagaaattgtcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtatgagttatgaatcgaaattaacttca 23824523  T
Q  113 cagtcgcagatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattg-nnnnnnnngttgtttagaatttgctgattactc 211  Q
    |||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||||||||||||||||    
T  23824524 cagtcgcatatccat-aatttcattcgcaatttaactcaatttttgttccagtggatttgtgattgaaaaaaaaagttgtttagaatttgctgattactc 23824622  T
Q  212 ttcaaactcaattttgtannnnnnngaaatttgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtag 311  Q
    ||||||||||||||| ||       ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23824623 ttcaaactcaattttttatttttttgaaatctttgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtag 23824722  T
Q  312 tagtaattaatgagtagtgtgtcgacatgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaaatag 411  Q
    |||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23824723 tagtaattaatgagtagtgtg------tgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagaaaatgaaatag 23824816  T
Q  412 ttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23824817 ttttagatatagtaatgaattgttctagatttagactatggtattaagctttgttact 23824874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 23758375 - 23758758
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23758375 gttgccaaagaataagaaattgtcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 23758474  T
Q  113 cagtcgcagatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattg---nnnnnnnngttgtttagaatttgctgattac 209  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||           |||||||||||||||||||||||    
T  23758475 cagtcgcagatccat-aatttcattcgcaatttaactcaatttttcttccagtggatttgtgattgaaaaaaaaaaagttgtttagaatttgctgattac 23758573  T
Q  210 tcttcaaactcaattttgtannnnnnngaaatttgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagt 309  Q
    ||||||||||||||||| ||        |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23758574 tcttcaaactcaattttttatttttttcaaatctgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaacagaagttttgtgttgagaagt 23758673  T
Q  310 agtagtaattaatgagtagtgtgtcgacatgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcaga 400  Q
    ||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23758674 agtagtaattaatgagttgtgt------ttgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcaga 23758758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 23823832 - 23824215
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23823832 gttgccaaagaataagaaattgtcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 23823931  T
Q  113 cagtcgcagatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattg---nnnnnnnngttgtttagaatttgctgattac 209  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||           |||||||||||||||||||||||    
T  23823932 cagtcgcagatccat-aatttcattcgcaatttaactcaatttttcttccagtggatttgtgattgaaaaaaaaaaagttgtttagaatttgctgattac 23824030  T
Q  210 tcttcaaactcaattttgtannnnnnngaaatttgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagt 309  Q
    ||||||||||||||||| ||        |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23824031 tcttcaaactcaattttttatttttttcaaatctgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaacagaagttttgtgttgagaagt 23824130  T
Q  310 agtagtaattaatgagtagtgtgtcgacatgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcaga 400  Q
    ||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23824131 agtagtaattaatgagttgtgt------ttgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcaga 23824215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 24046504 - 24046286
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 112  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24046504 gttgccaaagaataagaaattagcctagagtggattggtggacttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaactcca 24046405  T
Q  113 cagtcgcagatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattg---nnnnnnnngttgtttagaatttgctgattac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||           ||||||||||||||| |||||||    
T  24046404 cagtcgcagatccatgattttcattcgcaatttaactcaatttttgttccagtggatttgtgattgaaagaaaaaaagttgtttagaatttgttgattac 24046305  T
Q  210 tcttcaaactcaattttgt 228  Q
    |||||||||||||||||||    
T  24046304 tcttcaaactcaattttgt 24046286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 24046171 - 24045988
Alignment:
Q  237 gaaatttgtgtttgattgatgttgccgcgtgcgt---aagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgt 333  Q
    ||||| || ||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24046171 gaaatctgcgtttggttgatgttgccgcgtgcgtcgtaagtataagaaatttaactgaagttttgtgttgagaagtaatagtaattaatgagtagtgtgt 24046072  T
Q  334 cgacatgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaaatagttttag 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24046071 cgacatgttagtgtttgttgttcatagaaataagtttgtaattttaagctttgttacatgaggcagagaatgaaatagttttag 24045988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 469
Target Start/End: Complemental strand, 24045173 - 24045118
Alignment:
Q  414 ttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24045173 ttagatatagtaatgaattgttctagatttagactatggtattaagctttgttact 24045118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 32268675 - 32268622
Alignment:
Q  479 ctcaacaagcttctatgccaaatctctagttttccattgaggctcacatcactc 532  Q
    |||||||||||||| || ||||||||| ||||||||||||  ||||| ||||||    
T  32268675 ctcaacaagcttctctgtcaaatctctcgttttccattgaaactcacgtcactc 32268622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 246 - 549
Target Start/End: Original strand, 28245742 - 28246044
Alignment:
Q  246 gtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacatgttagt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245742 gtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacatgttagt 28245841  T
Q  346 gtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaaatagttttagatatagtaatgaattgttctagatttag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  28245842 gtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagaaaatgaattagttttagatatagtgatgaattgttctagatttag 28245941  T
Q  446 actatggtattaagcgttgttactcgggtttacctcaacaagcttctatgccaaatctctagttttccattgaggctcacatcactcgttttttcagtgc 545  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  28245942 actatggtattaagctttgttactcggg-ttacctcaacaagcttctatgccaaatctctagttttccattgagattcacatcactcgttttttcagtgc 28246040  T
Q  546 aaac 549  Q
    ||||    
T  28246041 aaac 28246044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 187 - 469
Target Start/End: Original strand, 45350088 - 45350370
Alignment:
Q  187 gttgtttagaatttgctgattactcttcaaactcaattttgtannnnnnngaaatttgtgtttgattgatgttgccgcgtgcgtaagtataagaaattta 286  Q
    |||||||| ||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45350088 gttgtttacaatttgctgattactcttcaaactcaattttgtactttttggaaatctgtgtttgattgatgttgccgcgtgcgtaagtataagaaattta 45350187  T
Q  287 actgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacatgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttg 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45350188 actgaagttttgtgttgagaagtagtagtaattaatgagtagtgtttcgacatgtcagtgtttgttgttcatagaaatgagtttgtaattttaagctttg 45350287  T
Q  387 ttacatgaggcagataatgaaatagttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  45350288 ttacatgaggcagagaatgacatagttttatatatagtaatgaattgttctagatttagtttatggtattaagctttgttact 45350370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 28245400 - 28245618
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  28245400 gttgccaaagaataagaaattatcctagagtggattggtggatttgttataaattgaaatttaactcaattttttgagttatgaatcgaaataaacttca 28245499  T
Q  113 cagtc---gcagatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattgnnnnnnnngttgtttagaatttgctgattac 209  Q
    |||||   |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||    
T  28245500 cagtcgctgcagatccatgattttcattcgcaatttaactcaatttttgttccagtggatttgtgattgaaaaaaaagttgtttagaatttgctgattac 28245599  T
Q  210 tcttcaaactcaattttgt 228  Q
    |||||||||||||||||||    
T  28245600 tcttcaaactcaattttgt 28245618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 247 - 342
Target Start/End: Complemental strand, 19450560 - 19450465
Alignment:
Q  247 tttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacatgtt 342  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19450560 tttgtttgatgttgccgcgtgcgtaagtataagaaatttaattgaagttttgtgttgagaagtagtagtaattaattagtagtgtgtcgacatgtt 19450465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 247 - 342
Target Start/End: Original strand, 19530516 - 19530611
Alignment:
Q  247 tttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacatgtt 342  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19530516 tttgtttgatgttgccgcgtgcgtaagtataagaaatttaattgaagttttgtgttgagaagtagtagtaattaattagtagtgtgtcgacatgtt 19530611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 19359019 - 19359108
Alignment:
Q  253 tgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacatgtt 342  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19359019 tgatgttgctgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaattagtagtgtgtcgacatgtt 19359108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 45349971 - 45350060
Alignment:
Q  13 gttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaa 102  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45349971 gttgccaaagaataacaaattatcctagagtggattggtggattttttatgaattgaaatttaactcaattgtttgagttatgaatcgaa 45350060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 5531900 - 5531825
Alignment:
Q  247 tttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaat 322  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  5531900 tttgtttgatgttgccgcgtgcataagtataagaaatttaactgaagttttatgttgagaagtattagtaattaat 5531825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 469
Target Start/End: Complemental strand, 19449553 - 19449481
Alignment:
Q  397 cagataatgaaatagttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  19449553 cagagaatgaaatagttttagatatagtaatgaattgttctagatttagtttatggtattaagctttgttact 19449481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 19531523 - 19531595
Alignment:
Q  397 cagataatgaaatagttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  19531523 cagagaatgaaatagttttagatatagtaatgaattgttctagatttagtttatggtattaagctttgttact 19531595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 5531989 - 5531916
Alignment:
Q  293 gttttgtgttgagaagtagtagtaattaatgagtagtgtgtcgacatgttagtgtttgttgttcatagaaatga 366  Q
    ||||| |||||||||||||||||||||||||||| |||| ||  | ||| ||||||||||||||||||||||||    
T  5531989 gttttatgttgagaagtagtagtaattaatgagtggtgtatctgcctgtcagtgtttgttgttcatagaaatga 5531916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 19358835 - 19358888
Alignment:
Q  57 tgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaactt 110  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  19358835 tgttatgaattgcaatttaactcaattttttgagttatgaatcgaaattaactt 19358888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 1e-95; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 237 - 442
Target Start/End: Original strand, 9239034 - 9239239
Alignment:
Q  237 gaaatttgtgtttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaatgagtagtgtgtcga 336  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9239034 gaaatctgcgtttgattgatgttgtcgcgtgcataagtataagaaatttaactgaagttttgtgttaagaagtagtagtaattaatgagtagtgtgtcga 9239133  T
Q  337 catgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagataatgaaatagttttagatatagtaatgaattgttc 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  9239134 catgttagtgtttgttgttcatagaaatgagtttgtaattttaagctttgttacatgaggcagagaatgaaatagttttagatatagtgatgaattgttc 9239233  T
Q  437 tagatt 442  Q
    ||||||    
T  9239234 tagatt 9239239  T

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Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 9238702 - 9238919
Alignment:
Q  14 ttgccaaagaataagaaattatcctagagtggattggtggatttgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaacttcac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  9238702 ttgccaaagaataagaaattatcctagagtggattggtggatttgttataaattgaaatttaactcaattttttgagttatgaatcgaagttaacttcac 9238801  T
Q  114 agt---cgcagatccatgattttcattcgcaatttaactcaatttttgttctagtggatttgtgattgnnnnnnnngttgtttagaatttgctgattact 210  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||        ||||||||||||||||||||||||    
T  9238802 agtcgccgcagatccatgattttcattcgcaatttaactcaatttttgttccaatggatttgtgattgaaaaaaaagttgtttagaatttgctgattact 9238901  T
Q  211 cttcaaactcaattttgt 228  Q
    ||||||||||||||||||    
T  9238902 cttcaaactcaattttgt 9238919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 9240232 - 9240311
Alignment:
Q  390 catgaggcagataatgaaatagttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  9240232 catgaggcagagaatgacatagttttagatatagtaatgaattgttctagatttagactatgatattaagctttgttact 9240311  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 9239251 - 9239294
Alignment:
Q  387 ttacatgaggcagataatgaaatagttttagatatagtaatgaa 430  Q
    |||||||||| ||| ||||||||||||||||||||||| |||||    
T  9239251 ttacatgaggtagagaatgaaatagttttagatatagtgatgaa 9239294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 9240190 - 9240229
Alignment:
Q  120 agatccatgattttcattcgcaatttaactcaatttttgt 159  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  9240190 agatccatgattttcattcgcaatttaactacatttttgt 9240229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 466 - 549
Target Start/End: Complemental strand, 645259 - 645177
Alignment:
Q  466 tactcgggtttacctcaacaagcttctatgccaaatctctagttttccattgaggctcacatcactcgttttttcagtgcaaac 549  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  645259 tactcgggtt-acctcaacaagcttctatgccaaatctctagttttccattgagactcacatcactcgttttttcagtgcaaac 645177  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 374 - 469
Target Start/End: Complemental strand, 43602965 - 43602870
Alignment:
Q  374 attttaagctttgttacatgaggcagataatgaaatagttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    |||||||| ||||||  |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||  |||||| |||||| ||||||||    
T  43602965 attttaagatttgtttgatgaggcagagaatgacatagttttagatatagtgatgaattgttctagatttagtttatggtgttaagctttgttact 43602870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 469
Target Start/End: Complemental strand, 1154455 - 1154390
Alignment:
Q  404 tgaaatagttttagatatagtaatgaattgttctagatttagactatggtattaagcgttgttact 469  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  1154455 tgaaatagttttagatatagtaatgaattgttctagatttagtttatggtattaagctttgttact 1154390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 1155381 - 1155306
Alignment:
Q  247 tttgattgatgttgccgcgtgcgtaagtataagaaatttaactgaagttttgtgttgagaagtagtagtaattaat 322  Q
    |||| |||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||| |||||||||||    
T  1155381 tttgtttgatgttgccgtgtgcgtaagtataagcaatttagttgaagttttgtgttgagaagtaatagtaattaat 1155306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 1155559 - 1155506
Alignment:
Q  57 tgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaactt 110  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  1155559 tgttatgaattgcaatttaactcaattttttgagttatgaatcgaaattaactt 1155506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 43603134 - 43603081
Alignment:
Q  57 tgttatgaattgaaatttaactcaattgtttgagttatgaatcgaaattaactt 110  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  43603134 tgttatgaattgcaatttaactcaattttttgagttatgaattgaaattaactt 43603081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 1524234 - 1524273
Alignment:
Q  479 ctcaacaagcttctatgccaaatctctagttttccattga 518  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  1524234 ctcaacaagcttctctgccaaatctctcgttttccattga 1524273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 540
Target Start/End: Complemental strand, 1546006 - 1545943
Alignment:
Q  477 acctcaacaagcttctatgccaaatctctagttttccattgaggctcacatcactcgttttttc 540  Q
    |||||||||||||||| | ||||||||||| |||||||||||  |||||| |||| ||| ||||    
T  1546006 acctcaacaagcttctctaccaaatctctacttttccattgaaactcacaacacttgttctttc 1545943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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