View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8157_low_9 (Length: 418)
Name: NF8157_low_9
Description: NF8157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8157_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 1961918 - 1962297
Alignment:
| Q |
16 |
cactctcaatctataaggcgagccaaaattgataagttgtctctatattgtcaaatctaatacaaacccttggcttccaagaacatctgaaaatgtcatg |
115 |
Q |
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| T |
1961918 |
cactctcaatctataaggcgagccaaaattgataagttgtctctatattgtcaaatctaatacaaacccttggcttccaagaacatttgaaaatgtcatg |
1962017 |
T |
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| Q |
116 |
tttgatcaaactccccaaataaagtaacctggcaaatgaatagtagaattaaaaattatatttatccaataattgtattcctaatataaaaatgataatg |
215 |
Q |
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| T |
1962018 |
tttgatcaaactcccaaaataaagtaacctggcaaatgaatagtagaattaaaaattatatttatccaataattgtattcctaatataaaaatgataatg |
1962117 |
T |
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| Q |
216 |
atcactaaataaaagtc--nnnnnnnnnccataccaataaataaccagaatgtggcaagtaataaaattcagaagtcaaggctgcgctgtttggtcaatg |
313 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962118 |
atcactaaataaaagtctttttttttttccataccaataaataaccagaatgtggcaagtaataaaattcagaagtcaaggctgcgctgtttggtcaatg |
1962217 |
T |
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| Q |
314 |
gttggggtgaaagtctgacctgtttgtggtttttacccaattctgtgtgctggacacaaagatacacttggtgcctgttt |
393 |
Q |
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| T |
1962218 |
gttggggtgaaagtctgacctgtttgtggtttttacccaattctgtgtgctggacacaaagatacacttggtgcctgttt |
1962297 |
T |
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