View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8158_low_5 (Length: 331)
Name: NF8158_low_5
Description: NF8158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8158_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 8437514 - 8437837
Alignment:
| Q |
1 |
ctgaaacgtgtaacagtttagttttgttctcaaggaaatatattgccagtaaacaaaaaagataaggatatatctttcgaaaaatgaaatcagtgagaca |
100 |
Q |
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| T |
8437514 |
ctgaaacgtgtaacagtttagttttgttctcaaggaaatatattgccagtaaacaaaaaagataaggatatatctttcgaaaaatgaaatcagtgagaca |
8437613 |
T |
|
| Q |
101 |
aatccttaacnnnnnnnnnnnnnnnnnnnngtttatgatcaatacaaacatgaacaagcaattgatttgattt------aataagtaacacgaactcctt |
194 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8437614 |
aatccttaactatatatctcacaaaaatatgtttatgatcaatacacacatgaacaagcaattgatttgatttgattttaataagtaacacgaactcctt |
8437713 |
T |
|
| Q |
195 |
ggtacctgagaatttcaccaatgagttcacctttccctgaaccaacatacctaccagcaatcttaccatctctaatgaacaaaaaagtaggaacctgaac |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437714 |
ggtacctgagaatttcaccaatgagttcacctttccctgaaccaacatacctaccagcaatcttaccatctctaatgaacaaaaaagtaggaacctgaac |
8437813 |
T |
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| Q |
295 |
aacttccatgtccctcaaaaactg |
318 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
8437814 |
aacttccatgtccctcaaaaactg |
8437837 |
T |
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