View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8158_low_6 (Length: 292)
Name: NF8158_low_6
Description: NF8158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8158_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 12817224 - 12817003
Alignment:
| Q |
1 |
tcataaaccctaatatctcaaaataacatcaacattaatatgatttta----gtaaacccacatcaacattaaataataatatctaaagtacatcaaaat |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12817224 |
tcataaaccctaatatctcaaaataacatcaacattaatatgattttaattagtaaacccacatcaacattaaataata---tctaaagtacatcaaaat |
12817128 |
T |
|
| Q |
97 |
atatgacaaagtagttatttttcttttaaaatcaattttttatatatgaaaaaacgatcaaaatgattgttgaaaaataactcaaactattgagagaatt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12817127 |
atatgacaaagtagttatttttcttttaaaatcaattttttatatattaaaaaacgatcaaaatgattgttgaaaaataactcaaactattgagagaatt |
12817028 |
T |
|
| Q |
197 |
taaaagagtgttaaaacaatccttt |
221 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
12817027 |
taaaagagtgttaaaacaatccttt |
12817003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 16974582 - 16974528
Alignment:
| Q |
223 |
caaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcat |
277 |
Q |
| |
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| T |
16974582 |
caaaacgagcctttcgattctcacggtttactagacaatgttaagcgttattcat |
16974528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 12817258 - 12817225
Alignment:
| Q |
72 |
aataatatctaaagtacatcaaaatatatgacaa |
105 |
Q |
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| T |
12817258 |
aataatatctaaagtacatcaaaatatatgacaa |
12817225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 23027450 - 23027392
Alignment:
| Q |
219 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcat |
277 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23027450 |
tttccaaaacgagcctttcgattctcaaggattattagacaatgtgaagcgttattcat |
23027392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 10213965 - 10213910
Alignment:
| Q |
219 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttatt |
274 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| | |||||||| |||||||||| |
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|
| T |
10213965 |
tttccaaaacgagccttttgattctcacggtttacttgacaatgttaagcgttatt |
10213910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 48777834 - 48777776
Alignment:
| Q |
219 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcat |
277 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
48777834 |
tttccaaaacgagtcgttcgattctcaaggtttattagacaatgttaagcgttattcat |
48777776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 356298 - 356356
Alignment:
| Q |
219 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcat |
277 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||||| |
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|
| T |
356298 |
tttccaaaacgagcctttcgattctcacggtttacttgacaatgttaagcgttattcat |
356356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 12699237 - 12699286
Alignment:
| Q |
219 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagc |
268 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||| |||| |
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|
| T |
12699237 |
tttccaaaacgagcctttcgattctcacggtttactagacaatgttaagc |
12699286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 46562294 - 46562240
Alignment:
| Q |
223 |
caaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcat |
277 |
Q |
| |
|
||||| ||||||||||||||||| |||||| | |||||||| ||||||||||||| |
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| T |
46562294 |
caaaatgagcctttcgattctcacggtttacttgacaatgttaagcgttattcat |
46562240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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