View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8158_low_7 (Length: 250)

Name: NF8158_low_7
Description: NF8158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8158_low_7
NF8158_low_7
[»] chr6 (4 HSPs)
chr6 (1-116)||(3347845-3347966)
chr6 (190-236)||(3346790-3346836)
chr6 (114-192)||(3347732-3347810)
chr6 (179-232)||(7441664-7441717)
[»] chr5 (1 HSPs)
chr5 (116-224)||(26529078-26529186)
[»] chr8 (2 HSPs)
chr8 (179-232)||(19459070-19459123)
chr8 (179-232)||(19556748-19556801)
[»] chr7 (1 HSPs)
chr7 (180-232)||(31427426-31427478)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3347966 - 3347845
Alignment:
Q  1 ttaataatgtggatgtttaaattgtattgtctatggtagttgtatttgt------ttaatgatatttacaatttcatttacattttagagatgatttctt 94  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||      |||||||||||||||| || |||||||||||||||||||||||||    
T  3347966 ttaataatgtggatgtttaaattttattgtctatcgtagttgtatttgtaagtttttaatgatatttacaacttgatttacattttagagatgatttctt 3347867  T
Q  95 ggtaagaaaaaatgcggaccat 116  Q
    ||||||||||||||||||||||    
T  3347866 ggtaagaaaaaatgcggaccat 3347845  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 3346836 - 3346790
Alignment:
Q  190 taaatattctttctacttctctcatttctaataaaattggttgctcg 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3346836 taaatattctttctacttctctcatttctaataaaattggttgctcg 3346790  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 3347810 - 3347732
Alignment:
Q  114 cattgtttaagtacttaagttagagtttgaatttttctgggacaaatacctcttgtannnnnnncgagttgtgggttaa 192  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||    
T  3347810 cattgtttaaatatttaagttagagtttgaatttttctgggacaaatacctcctgtatttttttcgagttgtgggttaa 3347732  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 7441664 - 7441717
Alignment:
Q  179 gagttgtgggttaaatattctttctacttctctcatttctaataaaattggttg 232  Q
    |||||| ||||||| || ||||| |||||||||| |||||||||||||||||||    
T  7441664 gagttgcgggttaagtactctttgtacttctctcctttctaataaaattggttg 7441717  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 26529078 - 26529186
Alignment:
Q  116 ttgtttaagtacttaagttagagtttgaatttttctgggacaaatacctcttgtannnnnnncgagttgtgggttaaatattctttctacttctctcatt 215  Q
    |||||||| ||||||||||||||||||| |||||  ||| |||||| |||||||        ||| ||||||||||| |||||||| |||||||||| ||    
T  26529078 ttgtttaaatacttaagttagagtttgattttttaaggggcaaatatctcttgtcattttcccgaattgtgggttaagtattctttgtacttctctcttt 26529177  T
Q  216 tctaataaa 224  Q
    |||||||||    
T  26529178 tctaataaa 26529186  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 19459123 - 19459070
Alignment:
Q  179 gagttgtgggttaaatattctttctacttctctcatttctaataaaattggttg 232  Q
    |||||||||||||| || |||||||||| ||||| ||||||||||| |||||||    
T  19459123 gagttgtgggttaagtactctttctactgctctcctttctaataaatttggttg 19459070  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 19556801 - 19556748
Alignment:
Q  179 gagttgtgggttaaatattctttctacttctctcatttctaataaaattggttg 232  Q
    |||||||||||||| || |||||||||| ||||| ||||||||||| |||||||    
T  19556801 gagttgtgggttaagtactctttctactgctctcctttctaataaatttggttg 19556748  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 31427478 - 31427426
Alignment:
Q  180 agttgtgggttaaatattctttctacttctctcatttctaataaaattggttg 232  Q
    |||||||||| || || |||||||| ||||| |||||||||||||||| ||||    
T  31427478 agttgtgggtgaagtactctttctatttctcccatttctaataaaattcgttg 31427426  T

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