View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8159_high_3 (Length: 246)
Name: NF8159_high_3
Description: NF8159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8159_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 35448237 - 35448003
Alignment:
| Q |
11 |
catagagatcaaatttactttgnnnnnnnnctcacaaacaatatattatatatagctctcatttattacagaatataggaaagaaaatcatccttattac |
110 |
Q |
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| T |
35448237 |
catagagatcaaatttactttgtttttgt-ctcacaaacaatatattatatatagctcacatttattacagaatataggaaagaaaatcatccttattac |
35448139 |
T |
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| Q |
111 |
aaaaccaaacagagtgcatgatccaactgcactatagctcacacttaaaaatccaaagtactatattagtataatttataactgcactaataatccagag |
210 |
Q |
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| T |
35448138 |
ataaccaaacagagtgcatgatccaactgcactatagctcacacttaaaaatccaaagtactatattagtataatttataactgcactaataatccagag |
35448039 |
T |
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| Q |
211 |
gataagcagcatctgtgttacacttcaacaagactt |
246 |
Q |
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| T |
35448038 |
gataagcagcatctgtgtcacacttcaacaagactt |
35448003 |
T |
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