View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8159_low_11 (Length: 204)
Name: NF8159_low_11
Description: NF8159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8159_low_11 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 6186836 - 6186633
Alignment:
| Q |
1 |
aacatggggacaaatgatgagttcgataagcaatgacatcgacgaggaaacacctttgcaaacaaggttgaataagctaacatcatcgatcggaaaagtt |
100 |
Q |
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| T |
6186836 |
aacatggggacaaatgatgagttcgataagcaatgacatcgatgaggaaacacctttgcaaacaaggttgaataagctaacatcatcgatcggaaaagtt |
6186737 |
T |
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| Q |
101 |
ggtttggttgtcgcgtttttagtcttggttgttttattgattcgatatttcaccggtaacacaaagactgataacggaggtagaggattccacggtagaa |
200 |
Q |
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| T |
6186736 |
ggtttggttgtcgcgtttttagtcctggttgttctcttggttcgatatttcaccgggaatacaaagactgatgccggagttagagaattcaatggtagaa |
6186637 |
T |
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| Q |
201 |
agac |
204 |
Q |
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|||| |
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| T |
6186636 |
agac |
6186633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 4243780 - 4243577
Alignment:
| Q |
1 |
aacatggggacaaatgatgagttcgataagcaatgacatcgacgaggaaacacctttgcaaacaaggttgaataagctaacatcatcgatcggaaaagtt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||| || ||||| || |||||||| ||| |
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| T |
4243780 |
aacatggggacaaatgatgagttccataagcaatgacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctcaatcggaaaggtt |
4243681 |
T |
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| Q |
101 |
ggtttggttgtcgcgtttttagtcttggttgttttattgattcgatatttcaccggtaacacaaagactgataacggaggtagaggattccacggtagaa |
200 |
Q |
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||||||| |||||| ||||||||| | |||||| | |||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
4243680 |
ggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagactgataacggagttagagagttcaacggtagaa |
4243581 |
T |
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| Q |
201 |
agac |
204 |
Q |
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|||| |
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| T |
4243580 |
agac |
4243577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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