View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8159_low_2 (Length: 509)
Name: NF8159_low_2
Description: NF8159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8159_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 66 - 493
Target Start/End: Original strand, 45285572 - 45285995
Alignment:
| Q |
66 |
gtaatttgattcaccactataatgtttatagtttggttgctttggtttgaactaatattaatacataattcaaatcaatcttcaattaaattgtatttac |
165 |
Q |
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| T |
45285572 |
gtaatttgattcaccactataatgtttatagttttgttgctttggtttgaactaatattaatgcataattcaaatcaatcttcaattaaattgtatttac |
45285671 |
T |
|
| Q |
166 |
ctctcagtcaaactctagattatcacgacttcgttcaactaagaattggaggctaagccnnnnnnnnnnctaactactaatagtgaagattgttgattcc |
265 |
Q |
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| T |
45285672 |
ctctcactcaaactctagattatcacgacttccttcaactaagaattggaggctaagccaaaaaaaaa-ctaactactaatagtgaagattgttgattcc |
45285770 |
T |
|
| Q |
266 |
aaactagccccacacaaacaaccatccaaacggcaacacaaaagaaactaagtagcgttgccaaatttgtcacaacccacacattcacataacaaggtcg |
365 |
Q |
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| T |
45285771 |
aaactagcc--acacaaacaaccatccaaacggcaacacaaaaaaaactaagtaacgttgccaaatttgtcacaacccacacattcacataacaaggtcg |
45285868 |
T |
|
| Q |
366 |
aagaaggaaactcgcacattacacaaatcagctatcattgtatagtttatgtttgtgttaatggtaatgaatttagcaaaattacaacggttcaacgaaa |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45285869 |
aagaaggaaactcgcacattacacaaatcagctatcattgtatagtttatgtttgtgttaatggtaatgaatttagcaaaattacaacggttcaac-aaa |
45285967 |
T |
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| Q |
466 |
tttttgacaaaaattttacttcggaatt |
493 |
Q |
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| T |
45285968 |
attttgacaaaaattttacttcggaatt |
45285995 |
T |
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