View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8159_low_4 (Length: 301)

Name: NF8159_low_4
Description: NF8159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8159_low_4
NF8159_low_4
[»] chr1 (6 HSPs)
chr1 (22-291)||(18472643-18472912)
chr1 (22-270)||(25921693-25921939)
chr1 (165-269)||(43407207-43407307)
chr1 (22-118)||(16075097-16075193)
chr1 (22-56)||(33007406-33007440)
chr1 (22-56)||(43407122-43407156)
[»] chr7 (7 HSPs)
chr7 (22-291)||(48653552-48653821)
chr7 (67-245)||(7589136-7589312)
chr7 (205-291)||(48576938-48577021)
chr7 (165-269)||(10288631-10288731)
chr7 (22-56)||(10288546-10288580)
chr7 (22-56)||(40106227-40106261)
chr7 (22-56)||(49170058-49170092)
[»] chr5 (4 HSPs)
chr5 (22-291)||(42861597-42861866)
chr5 (88-264)||(25101745-25101915)
chr5 (88-264)||(25160838-25161008)
chr5 (22-55)||(6309186-6309219)
[»] chr6 (4 HSPs)
chr6 (22-281)||(13773138-13773397)
chr6 (104-217)||(20555538-20555644)
chr6 (22-56)||(10751315-10751349)
chr6 (22-56)||(23260369-23260403)
[»] chr2 (6 HSPs)
chr2 (22-291)||(35670507-35670772)
chr2 (22-291)||(12774147-12774422)
chr2 (105-291)||(28266950-28267137)
chr2 (108-275)||(41340068-41340233)
chr2 (22-56)||(18292449-18292483)
chr2 (22-56)||(40729182-40729216)
[»] chr8 (6 HSPs)
chr8 (88-193)||(3189255-3189363)
chr8 (90-198)||(22635850-22635958)
chr8 (19-55)||(22816028-22816064)
chr8 (22-56)||(22635738-22635772)
chr8 (22-56)||(41958177-41958211)
chr8 (22-119)||(44436477-44436573)
[»] chr4 (6 HSPs)
chr4 (22-258)||(13652750-13652986)
chr4 (22-258)||(13660875-13661111)
chr4 (22-86)||(2761815-2761879)
chr4 (176-263)||(42900030-42900117)
chr4 (22-56)||(55162571-55162605)
chr4 (22-55)||(69782-69815)
[»] chr3 (3 HSPs)
chr3 (165-269)||(7336534-7336634)
chr3 (22-56)||(5004475-5004509)
chr3 (22-56)||(7336449-7336483)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 18472643 - 18472912
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18472643 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttagacaccacagagaattataagtttaacccgccactaaggcacac 18472742  T
Q  122 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18472743 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 18472842  T
Q  222 atctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacattgatgtccatc 291  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  18472843 atctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgacatttatgttcatc 18472912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 25921939 - 25921693
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 121  Q
    ||||||||||||||  ||| ||||||||||||||| |     ||||||  ||||||  ||||||| ||||||||||||||||||| ||||||||||||||    
T  25921939 cacagatgcatatgtcatgtatgatcatgaaaatgtaaacaaaatcccgtcacttaggcaccacaaagaattataagtttaacccaccactaaggcacac 25921840  T
Q  122 aaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaaga 220  Q
     |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||| |||| |||     |||||||||||||    
T  25921839 caaaaatgcatatgtcatgataataaaaatagaggcaatccccgccacttaggcaatcacacagaaagtaataccacatcatgc---acatgacaaaaga 25921743  T
Q  221 aatctttcataaaaggcttatttctcttcttattatttcagttcgataac 270  Q
    ||||| ||||||||| ||||||  |||||||||||||||||||| |||||    
T  25921742 aatctctcataaaagtcttattgttcttcttattatttcagttccataac 25921693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 43407207 - 43407307
Alignment:
Q  165 ccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 264  Q
    |||||||||||| || ||||||| ||||| |||| |||   | ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||  ||||    
T  43407207 ccacttaggcaatcacacagaaaataataccacatcat---acacacgacaaaagaaatctttcatgaaa-acttatttctcttcctattatttatgttc 43407302  T
Q  265 gataa 269  Q
    |||||    
T  43407303 gataa 43407307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 16075193 - 16075097
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggca 118  Q
    ||||||||||| ||| ||||||||||||||||||| ||| | |||||| ||||| |  ||||||| || | ||| |  ||||||||||| |||||||    
T  16075193 cacagatgcatttgccatgcatgatcatgaaaatgcatcctaaatcccgccactcaggcaccacaaagtaatatgatattaacccgccattaaggca 16075097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 33007406 - 33007440
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||||||||||||| |||||||||    
T  33007406 cacagatgcatatgctatgcatgattatgaaaatg 33007440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 43407122 - 43407156
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  43407122 cacagatgcatatgccatgcatgatcatgaaaatg 43407156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 48653552 - 48653821
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 121  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  48653552 cacagatgcatatgttatgcatgatcatgaaaatggatcatgaatcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacac 48653651  T
Q  122 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 221  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  48653652 caaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccacacagaaagtaataacacaacatcttatacatgataaaagaa 48653751  T
Q  222 atctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacattgatgtccatc 291  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  48653752 atctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcacatttatgttcatc 48653821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 7589136 - 7589312
Alignment:
Q  67 cccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgcc 166  Q
    |||||||||||| ||||||| | |||||||| ||||||||| |||| ||| |||| ||||||||  ||||||||||||||||||||||||||  ||||||    
T  7589136 cccaccacttaagcaccacaaaaaattataaatttaacccgtcactgagggacactaaaaatgc--atgtcatgataataaaaatagatgcatccccgcc 7589233  T
Q  167 acttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttct 245  Q
    ||  ||   |||| |||| || ||||||||||  ||  |  |||||||||||||  |||| |||||||| |||||||||    
T  7589234 accaagaggaccacacaggaaataataacacattataatgcacatgacaaaagaggtcttccataaaagtcttatttct 7589312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 48577021 - 48576938
Alignment:
Q  205 tatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacattgatgtccatc 291  Q
    |||||||||||||||||||||||||||||||||| |||||   ||||||||||| |||||||||||||||| ||||| |||| ||||    
T  48577021 tatacatgacaaaagaaatctttcataaaaggctcatttc---tcttattattttagttcgataacgatctcacatttatgttcatc 48576938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 10288631 - 10288731
Alignment:
Q  165 ccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 264  Q
    |||||||||||| || ||||||| ||||| |||| |||   | ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||  ||||    
T  10288631 ccacttaggcaatcacacagaaaataataccacatcat---acacacgacaaaagaaatctttcatgaaa-acttatttctcttcctattatttatgttc 10288726  T
Q  265 gataa 269  Q
    |||||    
T  10288727 gataa 10288731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 10288546 - 10288580
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  10288546 cacagatgcatatgccatgcatgatcatgaaaatg 10288580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 40106261 - 40106227
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  40106261 cacagatgcatatgccatgcatgatcatgaaaatg 40106227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 49170058 - 49170092
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  49170058 cacagatgcatatgccatgcatgatcatgaaaatg 49170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 291
Target Start/End: Complemental strand, 42861866 - 42861597
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  ||||||| ||||||||||||||||||||||||||||||||||    
T  42861866 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacac 42861767  T
Q  122 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 221  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  42861766 caaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttagacaaccacactgaaagtaataacacaacatcttatacatgacaaaagaa 42861667  T
Q  222 atctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacattgatgtccatc 291  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  42861666 atctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcacatttatgttcatc 42861597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 25101745 - 25101915
Alignment:
Q  88 agaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaaccagacagaa 186  Q
    ||||||||||||||||||||||||||||| |||  |||||||| ||| |||||||||| ||| ||||||||||||| |||||||| ||||||| ||||||    
T  25101745 agaattataagtttaacccgccactaaggtacatcaaaaatgcatatatcatgataatcaaa-tagatgcaatccccgccacttaagcaaccacacagaa 25101843  T
Q  187 agtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 264  Q
    | ||||| |||| |||     |||||||||| |||| || ||||||||| ||||||    ||||||||||||||||||    
T  25101844 aataataccacatcatgc---acatgacaaatgaaaactctcataaaagtcttattg---ttcttattatttcagttc 25101915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 25160838 - 25161008
Alignment:
Q  88 agaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaaccagacagaa 186  Q
    ||||||||||||||||||||||||||||| |||  |||||||| ||| |||||||||| ||| ||||||||||||| |||||||| ||||||| ||||||    
T  25160838 agaattataagtttaacccgccactaaggtacatcaaaaatgcatatatcatgataatcaaa-tagatgcaatccccgccacttaagcaaccacacagaa 25160936  T
Q  187 agtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 264  Q
    | ||||| |||| |||     |||||||||| |||| || ||||||||| ||||||    ||||||||||||||||||    
T  25160937 aataataccacatcatgc---acatgacaaatgaaaactctcataaaagtcttattg---ttcttattatttcagttc 25161008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 6309219 - 6309186
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaat 55  Q
    ||||||||||||||| ||||||||||||||||||    
T  6309219 cacagatgcatatgccatgcatgatcatgaaaat 6309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 13773138 - 13773397
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 121  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  13773138 cacagatgtatatgctatgcatgatcatgaaaatggatcatggatctcgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacac 13773237  T
Q  122 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 221  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  13773238 caaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccacacagaaagtaataactcaacatcctatacatgacaaaagaa 13773337  T
Q  222 atctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatt 281  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13773338 atctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgacatt 13773397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 20555644 - 20555538
Alignment:
Q  104 cccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatc 203  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||| || |||||| ||||||      ||||||||||||||||||||    
T  20555644 cccgccactaaagcacaccaaaaatgtttatgtcatgataataaaaatagatggaat-ccaccacttgggcaac------gaaagtaataacacaacatc 20555552  T
Q  204 ttatacatgacaaa 217  Q
     | |||||||||||    
T  20555551 atgtacatgacaaa 20555538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 10751315 - 10751349
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  10751315 cacagatgcatatgccatgcatgatcatgaaaatg 10751349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 23260369 - 23260403
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  23260369 cacagatgcatatgccatgcatgatcatgaaaatg 23260403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 35670507 - 35670772
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  ||||||| ||||||||||||||||||||||||||||||||||    
T  35670507 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacac 35670606  T
Q  122 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 221  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  35670607 caaaaattcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccacacagaaagtaataacacgacatcttatacatgacaaaagaa 35670706  T
Q  222 atctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacattgatgtccatc 291  Q
    ||||||||||||||||| |||| ||| ||||||||||||    ||||||||||| ||||| |||| ||||    
T  35670707 atctttcataaaaggctcatttatctgcttattatttca----gataacgatctcacatttatgttcatc 35670772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 12774147 - 12774422
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 121  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||  ||||||| |||  ||| |  ||| ||||||||||||||||||    
T  12774147 cacagatgcatatgcgatgcatgatcatgaaaatgaatcatgaatcccgccacttaggcaccacaaagagatatgatattatcccgccactaaggcacac 12774246  T
Q  122 aaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaaga 220  Q
     | |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||    
T  12774247 cacaaatgcttatgtcatgataataaaaacagatgcaatccccgccacttaggcaaccacacagaaagtaataatacaacatcatgtacatgacaaaaga 12774346  T
Q  221 aatctttcataaaaggc-----ttatttctcttcttattatttcagttcgataacgatctgacattgatgtccatc 291  Q
    |||||||||||||||||     | ||||||||| ||||||||| |||||||||||||||| ||||| |||| ||||    
T  12774347 aatctttcataaaaggctcatttaatttctcttattattattttagttcgataacgatctcacatttatgttcatc 12774422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 105 - 291
Target Start/End: Original strand, 28266950 - 28267137
Alignment:
Q  105 ccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatc-ccgccacttaggcaaccagacagaaagtaataacacaacatc 203  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  28266950 ccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaatctccgccacttaggcaaccacacagaaagtaataacacaacatc 28267049  T
Q  204 ttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacattgatgtccatc 291  Q
     | ||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||| ||||| |||| ||||    
T  28267050 atgtacatgacaaaagaaatctttcataaagggctcatttcccttcttattattttagttcgataacgatctcacatttatgttcatc 28267137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 108 - 275
Target Start/End: Original strand, 41340068 - 41340233
Alignment:
Q  108 ccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgcca-cttaggcaaccagacagaaagtaataacacaacatctta 206  Q
    |||||||||||||| ||||||||  || | |||| |||||||||| ||||||||||  || ||||| |||||| ||||||| ||||| |||| |||        
T  41340068 ccactaaggcacaccaaaaatgcacatattatgagaataaaaatatatgcaatccccacaacttagacaaccacacagaaaataataccacatcatgc-- 41340165  T
Q  207 tacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatct 275  Q
     ||| ||||||| ||||||||||||||| ||||||||||||| |||||||||| |||||||||| ||||    
T  41340166 -acacgacaaaaaaaatctttcataaaaagcttatttctcttattattatttctgttcgataacaatct 41340233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 18292449 - 18292483
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  18292449 cacagatgcatatgccatgcatgatcatgaaaatg 18292483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 40729182 - 40729216
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  40729182 cacagatgcatatgccatgcatgatcatgaaaatg 40729216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 3189255 - 3189363
Alignment:
Q  88 agaattataagtttaa---cccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagaca 183  Q
    ||||||||||||||||   |||||||||||||||||| |||||||| |||||||||| |||  ||||||||||||| ||||||||||||||||||| |||    
T  3189255 agaattataagtttaattacccgccactaaggcacaccaaaaatgcatatgtcatgagaat-caaatagatgcaatccccgccacttaggcaaccacaca 3189353  T
Q  184 gaaagtaata 193  Q
    ||||||||||    
T  3189354 gaaagtaata 3189363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 22635850 - 22635958
Alignment:
Q  90 aattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaag 188  Q
    ||||||||||||||||||||| ||| |||| | |||||||| |||||||||| |||  ||||||||||||| ||||||||||||||||||| ||||||||    
T  22635850 aattataagtttaacccgccattaaagcactccaaaaatgcatatgtcatgagaat-caaatagatgcaatccccgccacttaggcaaccacacagaaag 22635948  T
Q  189 taataacaca 198  Q
    ||||| ||||    
T  22635949 taataccaca 22635958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 22816028 - 22816064
Alignment:
Q  19 ccgcacagatgcatatgctatgcatgatcatgaaaat 55  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22816028 ccgcacagatgcatatgccatgcatgatcatgaaaat 22816064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 22635738 - 22635772
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  22635738 cacagatgcatatgccatgcatgatcatgaaaatg 22635772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 41958177 - 41958211
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  41958177 cacagatgcatatgccatgcatgatcatgaaaatg 41958211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 44436573 - 44436477
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcac 119  Q
    ||||||||||||||| | |||||||||||||||| ||   | || ||||||||| |  ||||||| |||| ||||| | |||||||| ||||||||||    
T  44436573 cacagatgcatatgccaagcatgatcatgaaaatagagactaaaacccaccactaaggcaccacacagaa-tataattataacccgcaactaaggcac 44436477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 13652986 - 13652750
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatca-tgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcaca 120  Q
    |||| |||||||| | ||||||||||||||||||| |  | | || ||| |||||||   |||||| ||||| |||||||||||||||||| ||||||||    
T  13652986 cacaaatgcatataccatgcatgatcatgaaaatgcaagactaaaacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcaca 13652887  T
Q  121 caaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaag 219  Q
    |   |||| | ||||||| |||||||||  |||||||||| ||||||||| |||||| || ||| ||| ||||| ||||  ||| |  ||||||||||||    
T  13652886 c--caaatacatatgtcacgataataaaggtagatgcaatccccgccactaaggcaatcacacaaaaaataatagcacattatcatgcacatgacaaaag 13652789  T
Q  220 aaatctttcataaaaggctta-tttctcttcttattattt 258  Q
    |  |||| ||| |||| |||| ||||||||||||||||||    
T  13652788 aggtcttccat-aaagtcttattttctcttcttattattt 13652750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 13661111 - 13660875
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatca-tgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcaca 120  Q
    |||| |||||||| | ||||||||||||||||||| |  | | || ||| |||||||   |||||| ||||| |||||||||||||||||| ||||||||    
T  13661111 cacaaatgcatataccatgcatgatcatgaaaatgcaagactaaaacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcaca 13661012  T
Q  121 caaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaag 219  Q
    |   |||| | ||||||| |||||||||  |||||||||| ||||||||| |||||| || ||| ||| ||||| ||||  ||| |  ||||||||||||    
T  13661011 c--caaatacatatgtcacgataataaaggtagatgcaatccccgccactaaggcaatcacacaaaaaataatagcacattatcatgcacatgacaaaag 13660914  T
Q  220 aaatctttcataaaaggctta-tttctcttcttattattt 258  Q
    |  |||| ||| |||| |||| ||||||||||||||||||    
T  13660913 aggtcttccat-aaagtcttattttctcttcttattattt 13660875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 2761815 - 2761879
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccaca 86  Q
    |||| |||||||||| ||||||||||||||||||| ||| | ||||||||||||||| |||||||    
T  2761815 cacaaatgcatatgccatgcatgatcatgaaaatgaatcctaaatcccaccacttaagcaccaca 2761879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 42900030 - 42900117
Alignment:
Q  176 accagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagtt 263  Q
    |||| ||||||||||||||||||  | | |  || ||||||| || || || |||||||| |||||||||||||||||||||| ||||    
T  42900030 accacacagaaagtaataacacattaacctgcacctgacaaatgagattttccataaaagtcttatttctcttcttattattttagtt 42900117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 55162605 - 55162571
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  55162605 cacagatgcatatgccatgcatgatcatgaaaatg 55162571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 69815 - 69782
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaat 55  Q
    ||||||||||||||| ||||||||||||||||||    
T  69815 cacagatgcatatgccatgcatgatcatgaaaat 69782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 7336534 - 7336634
Alignment:
Q  165 ccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 264  Q
    |||||||||||| || ||||||| ||||| |||| |||   | ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||  ||||    
T  7336534 ccacttaggcaatcacacagaaaataataccacatcat---acacacgacaaaagaaatctttcatgaaa-acttatttctcttcctattatttatgttc 7336629  T
Q  265 gataa 269  Q
    |||||    
T  7336630 gataa 7336634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 5004475 - 5004509
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  5004475 cacagatgcatatgccatgcatgatcatgaaaatg 5004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 7336449 - 7336483
Alignment:
Q  22 cacagatgcatatgctatgcatgatcatgaaaatg 56  Q
    ||||||||||||||| |||||||||||||||||||    
T  7336449 cacagatgcatatgccatgcatgatcatgaaaatg 7336483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University