View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8159_low_5 (Length: 255)

Name: NF8159_low_5
Description: NF8159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8159_low_5
NF8159_low_5
[»] chr5 (2 HSPs)
chr5 (19-251)||(37050359-37050591)
chr5 (171-228)||(26897430-26897487)
[»] chr4 (3 HSPs)
chr4 (143-235)||(45002076-45002168)
chr4 (139-227)||(8362354-8362442)
chr4 (140-227)||(16648899-16648986)
[»] chr8 (2 HSPs)
chr8 (140-240)||(13795002-13795102)
chr8 (140-188)||(12686923-12686971)
[»] chr6 (4 HSPs)
chr6 (140-230)||(10329286-10329375)
chr6 (139-227)||(3226973-3227060)
chr6 (151-218)||(14586836-14586903)
chr6 (146-227)||(6876765-6876844)
[»] scaffold0034 (1 HSPs)
scaffold0034 (140-240)||(102671-102770)
[»] chr1 (2 HSPs)
chr1 (139-228)||(52240904-52240993)
chr1 (147-187)||(26308946-26308986)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 37050591 - 37050359
Alignment:
Q  19 caacagcaaaaactcaaatggttgcgatcactatagtagctaacgagtggctggaccaccatgcccaatatctagccgaaaatgcatatgttggcaatcc 118  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37050591 caacagcaaaaactcaaacggctgcgatcgctatagtagctaacgagtggctggaccaccatgcccaatatctagccaaaaatgcatatgttggcaatcc 37050492  T
Q  119 acttgtgtgggaagtccaaggcagggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcaca 218  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37050491 acttgtgcggggagtccaaggcagggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcaca 37050392  T
Q  219 atagacaaaattttgtgggtgtgcgtgtgtgcg 251  Q
    ||||||||||||||||| |||||||| ||||||    
T  37050391 atagacaaaattttgtgtgtgtgcgtatgtgcg 37050359  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 26897487 - 26897430
Alignment:
Q  171 ccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaaa 228  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  26897487 ccctcactttaagtccctgaattttggatttagaataaaggtctcacaatagacaaaa 26897430  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 45002076 - 45002168
Alignment:
Q  143 ggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaaattttgtg 235  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  45002076 ggctggcctaagggtaaggcgacccaagctctcgctttcggcccctgacttttggatttagaataaaggtctcacaatagacaaaattgtgtg 45002168  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 8362442 - 8362354
Alignment:
Q  139 gcagggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaa 227  Q
    ||||| ||||||||||| |||||  ||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||    
T  8362442 gcaggactggcctaaggttaaggcaacccaagccctcgctttaggcccccatattttggacttagaataaaggtctcacaatagacaaa 8362354  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 16648899 - 16648986
Alignment:
Q  140 cagggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaa 227  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||  ||||| ||||||| |||||||| |||||||||||||||    
T  16648899 caggtctgacctaagggtaaggcgacccaagccctcgctttaggcccccaaatttcggatttataataaaggcctcacaatagacaaa 16648986  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 13795002 - 13795102
Alignment:
Q  140 cagggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaaattttgtgggtg 239  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||||| || |||| |||    
T  13795002 cagggctggcctaagggtaaggcgacccaagccctcgctttaggcctctgaattttggacttagaataaaggcctaacaatagacaaatttgtgtgtgtg 13795101  T
Q  240 t 240  Q
    |    
T  13795102 t 13795102  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 12686923 - 12686971
Alignment:
Q  140 cagggctggcctaagggtaaggtgacccaagccctcgctttaggcccct 188  Q
    |||||| ||||||||||||| |  ||| |||||||||||||||||||||    
T  12686923 cagggccggcctaagggtaaagccaccaaagccctcgctttaggcccct 12686971  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 10329375 - 10329286
Alignment:
Q  140 cagggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaaatt 230  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||||||| |||| |||||||||||||    
T  10329375 cagggctggcctaagggtaaggtgacccaagccctcgctctaggcctctgaa-tttggacttagaataaaggcctcataatagacaaaatt 10329286  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 3227060 - 3226973
Alignment:
Q  139 gcagggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaa 227  Q
    ||||||||||||||||||||||| ||| ||| |||||| |||||| || | || |||||| |||||||||||| || ||||||||||||    
T  3227060 gcagggctggcctaagggtaaggcgactcaaaccctcgttttagg-ccttcaaatttggagttagaataaaggccttacaatagacaaa 3226973  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 14586903 - 14586836
Alignment:
Q  151 taagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcaca 218  Q
    ||||||||| | ||||||||||||||||||||||| |||||||| ||| | ||||| |||||||||||    
T  14586903 taagggtaacgcgacccaagccctcgctttaggccactgaatttcggactaagaatgaaggtctcaca 14586836  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 6876844 - 6876765
Alignment:
Q  146 tggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaa 227  Q
    |||||||||||||||| ||| |||||| | |||||||||| |  ||||||||| ||  ||| ||||||| ||||||||||||    
T  6876844 tggcctaagggtaaggcgacacaagcctttgctttaggccaccaaattttggactt--aattaaggtcttacaatagacaaa 6876765  T

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Target: scaffold0034 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 102671 - 102770
Alignment:
Q  140 cagggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaaattttgtgggtg 239  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||| || |||| |||    
T  102671 cagggctggcctaagggtaaggcaacccaagcccttgctttaggctcc-gaattttggacttagaataaaggcctcacaatagacaaatttatgtgtgtg 102769  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 52240993 - 52240904
Alignment:
Q  139 gcagggctggcctaagggtaaggtgacccaagccctcgctttaggcccctgaattttggatttagaataaaggtctcacaatagacaaaa 228  Q
    |||||| |||||||||||||||   | |||||||||| ||||||||| | |||||||||| ||||| ||||||  |||| ||||||||||    
T  52240993 gcaggggtggcctaagggtaagccaaaccaagccctcactttaggcctccgaattttggacttagattaaaggcttcacgatagacaaaa 52240904  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 26308946 - 26308986
Alignment:
Q  147 ggcctaagggtaaggtgacccaagccctcgctttaggcccc 187  Q
    |||||||||||||||  ||| ||||||||||||||||||||    
T  26308946 ggcctaagggtaaggccaccaaagccctcgctttaggcccc 26308986  T

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