View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8159_low_6 (Length: 247)
Name: NF8159_low_6
Description: NF8159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8159_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 5749751 - 5749536
Alignment:
| Q |
17 |
ccacatggatatgatgatcttactactaaattacttgaaaaatttggtacaattgccaaatttgtcatgatccttcaaaatttgttttgaacggagtatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5749751 |
ccacatggatatgatgatcttactactaaattacttgaaaaatttggtgcaattgccaaatttgtcatgatccttcaaaatttgttttgaatggagtatg |
5749652 |
T |
|
| Q |
117 |
gtttttgaattcagacaaaatggttttaatattaaaatagta-aaaagattaaaaattaaccnnnnnnnnnagcttttctgtatgttcattatacattgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5749651 |
gtttttgaattcagacaaaatggttttaatattaaaatagtaaaaaagattaaaaattaacctttttttttagcttttctgtatgttcattatacattgt |
5749552 |
T |
|
| Q |
216 |
aaatagatgaaattat |
231 |
Q |
| |
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|||||||||||||||| |
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|
| T |
5749551 |
aaatagatgaaattat |
5749536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 9244172 - 9244280
Alignment:
| Q |
33 |
atcttactactaaattacttgaaaaatttggtacaattgccaaatttgtcatgatccttcaaaatttgttttgaacggagtatggtttttgaattcagac |
132 |
Q |
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|||||| || |||||||||| | | |||||| || || |||||||| |||| ||| |||||||||| ||||||| |||||| ||||| || || |||| |
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| T |
9244172 |
atcttaataataaattacttaatcagtttggtgcactttccaaatttatcatcatctttcaaaattttgtttgaacagagtattgttttcgattttagac |
9244271 |
T |
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| Q |
133 |
aaaatggtt |
141 |
Q |
| |
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||||||||| |
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| T |
9244272 |
aaaatggtt |
9244280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 9208567 - 9208676
Alignment:
| Q |
33 |
atcttactactaaattacttgaaaaatttggtacaattgccaaatttgtcatgatccttcaaaatttgttttgaacggagtatggtttttgaattcagac |
132 |
Q |
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|||||||||||||||||||| || | ||||| || |||||| |||| |||| ||| |||||||||| ||| ||| |||||| ||||| || || |||| |
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| T |
9208567 |
atcttactactaaattactt-aagcagttggtgcatttgccagatttatcatcatctttcaaaattttgtttaaacagagtattgttttcgattttagac |
9208665 |
T |
|
| Q |
133 |
aaaatggtttt |
143 |
Q |
| |
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|| |||||||| |
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| T |
9208666 |
aagatggtttt |
9208676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 9286095 - 9286205
Alignment:
| Q |
33 |
atcttactactaaattacttgaaaaatttggtacaattgccaaatttgtcatgatccttcaaaatttgttttgaacggagtatggtttttgaattcagac |
132 |
Q |
| |
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||||||||| |||||||||| || | ||| || || ||||||||||| |||| ||| |||||||||| |||||| |||||| |||| | || |||| |
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| T |
9286095 |
atcttactattaaattacttaaacattttcgtgcatttgccaaatttatcatcatctttcaaaattttgtttgaatagagtattattttcaattttagac |
9286194 |
T |
|
| Q |
133 |
aaaatggtttt |
143 |
Q |
| |
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||||||||||| |
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| T |
9286195 |
aaaatggtttt |
9286205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 18679789 - 18679574
Alignment:
| Q |
17 |
ccacatggatatgatgatcttactactaaattacttgaaaaatttggtacaattgccaaatttgtcatgatccttcaaaatttgttttgaacggagtatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18679789 |
ccacatggatatgatgatcttactactaaattacttgaaaaatttggtgcaattgccaaatttgtcatgatccttcaaaatttgttttgaatggagtatg |
18679690 |
T |
|
| Q |
117 |
gtttttgaattcagacaaaatggttttaatattaaaatagta-aaaagattaaaaattaaccnnnnnnnnnagcttttctgtatgttcattatacattgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18679689 |
gtttttgaattcagacaaaatggttttaatattaaaatagtaaaaaagattaaaaattaacctttttttttagcttttctgtatgttcattatacattgt |
18679590 |
T |
|
| Q |
216 |
aaatagatgaaattat |
231 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
18679589 |
aaatagatgaaattat |
18679574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 29925771 - 29925820
Alignment:
| Q |
35 |
cttactactaaattacttgaaaaatttggtacaattgccaaatttgtcat |
84 |
Q |
| |
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||||||||||||||||||||| ||||| | || |||||||||||||||| |
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| T |
29925771 |
cttactactaaattacttgaatgatttgctgcagttgccaaatttgtcat |
29925820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 29974925 - 29974974
Alignment:
| Q |
35 |
cttactactaaattacttgaaaaatttggtacaattgccaaatttgtcat |
84 |
Q |
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||||||||||||||||||||| ||||| | || |||||||||||||||| |
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| T |
29974925 |
cttactactaaattacttgaatgatttgctgcagttgccaaatttgtcat |
29974974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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