View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8159_low_9 (Length: 233)
Name: NF8159_low_9
Description: NF8159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8159_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6186403 - 6186181
Alignment:
| Q |
1 |
ttgattctttaaaagctgttttcaaaagtgattatttattttgtaacaagaatcttacttttgattctgtgatttgtaataggtacacttactttgaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186403 |
ttgattctttaaaagctgttttcaaaagtgattatttattttgtaacaagaatcttacttttgattctgtgatttgtaataggtacacttactttgaatc |
6186304 |
T |
|
| Q |
101 |
agatgaaggtgacaaagttttggctcggttttgaaccattggaaggaggtgcatattccaatgttgatccatctgttcttcaattgatcaaagaaggagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186303 |
agatgaaggtgacaaagttttggctcggttttgaaccattggaagaaggtgcatattccaatgttgatccatctgttcttcaattgatcaaagaaggagt |
6186204 |
T |
|
| Q |
201 |
tgctctcaatacaactggtgatg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6186203 |
tgctctcaatacaactggtgatg |
6186181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 4237226 - 4237091
Alignment:
| Q |
85 |
acacttactttgaatcagatgaaggtgacaaagttttggctcggttttgaaccattggaaggaggtgcatattccaatgttgatccatctgttcttcaat |
184 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||||||||||||| ||||| |||||| |||||| ||| ||||||| ||||||||||||| ||||||||||| |
|
|
| T |
4237226 |
acactcactatgaatcaaatgaaggtgacaaagttttggcttggtttagaaccaatggaagttggtacatattcaaatgttgatccatttgttcttcaat |
4237127 |
T |
|
| Q |
185 |
tgatcaaagaaggagttgctctcaatacaactggtg |
220 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4237126 |
tgatcaaagaaggagtttctctcaatacaactggtg |
4237091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University