View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8160_high_2 (Length: 547)
Name: NF8160_high_2
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8160_high_2 |
 | |
|
| [»] scaffold0248 (1 HSPs) |
| | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0763 (1 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 55 - 540
Target Start/End: Original strand, 19154080 - 19154565
Alignment:
| Q |
55 |
aaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacct |
154 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19154080 |
aaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttctaaacct |
19154179 |
T |
|
| Q |
155 |
ttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19154180 |
ttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccat |
19154279 |
T |
|
| Q |
255 |
caagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgatta |
354 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19154280 |
caagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgatta |
19154379 |
T |
|
| Q |
355 |
atggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaattagggaaaatccaacattctcccact |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19154380 |
atggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattagggaaaatccaacattctcccact |
19154479 |
T |
|
| Q |
455 |
tggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattgagtattatct |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19154480 |
tggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcaaagcgacaggtcctctttaattgagtattatct |
19154565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 55 - 445
Target Start/End: Original strand, 19159985 - 19160375
Alignment:
| Q |
55 |
aaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacct |
154 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19159985 |
aaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttctaaacct |
19160084 |
T |
|
| Q |
155 |
ttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19160085 |
ttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttaggaaaccaaaacaaatgaactgcactcctttatataacttctgccat |
19160184 |
T |
|
| Q |
255 |
caagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgatta |
354 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19160185 |
caagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttattaaatttaagggaaagaataaagactattttctgatta |
19160284 |
T |
|
| Q |
355 |
atggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaattagggaaaatccaacat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19160285 |
atggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattagggaaaatccaacat |
19160375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 31 - 362
Target Start/End: Original strand, 4253074 - 4253405
Alignment:
| Q |
31 |
atgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttga |
130 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
4253074 |
atgtaagttatttcataaagaacaaaagaaataactacttaaacaacggaaatttaaattaaaggatcaaggcatacctccagccactactcctgcttga |
4253173 |
T |
|
| Q |
131 |
agaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgc |
230 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4253174 |
agaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactac |
4253273 |
T |
|
| Q |
231 |
actcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4253274 |
actcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatggacagttactaaatttaagggaa |
4253373 |
T |
|
| Q |
331 |
agaataaagaccattttctgattaatggataa |
362 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
4253374 |
agaataaagaacattttctgattaatggataa |
4253405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 31 - 382
Target Start/End: Complemental strand, 11576638 - 11576289
Alignment:
| Q |
31 |
atgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttga |
130 |
Q |
| |
|
|||||| |||||||| | ||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||| |
|
|
| T |
11576638 |
atgtaaattatttcataaagaacaaaataaataactacttaaacagcggaaacttaaattaaaggattaagacatacctc--gccattgctcctgcttga |
11576541 |
T |
|
| Q |
131 |
agaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgc |
230 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
11576540 |
agaagttgaggctcttctaaagctttcacaatctcactttgatggtgcaagtctcctgaatagagatgttaggcttagagaaccaaaataaatgaactac |
11576441 |
T |
|
| Q |
231 |
actcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
11576440 |
actcctttatataacttctgccatcaagaagttactggacgtgcaaaacaaaactgctcctccactcactcataatgggcagttattaaatttaacagaa |
11576341 |
T |
|
| Q |
331 |
agaataaagaccattttctgattaatggataattaccactatgtgcacttag |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11576340 |
agaataaagaccattttctgattaatggataactaccactatgtgcacttag |
11576289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 11575619 - 11575562
Alignment:
| Q |
378 |
cttagtgggtaattaacacttatttatttaattcaaaataaataacttaattagggaaaa |
437 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
11575619 |
cttagtgggtagttaccacttatttatttaaat--aaataaataacttaattagggaaaa |
11575562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 31 - 540
Target Start/End: Complemental strand, 18481110 - 18480601
Alignment:
| Q |
31 |
atgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttga |
130 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
18481110 |
atgtaagttatttcataaagaacaaaagaaataactacttaaacagcggaaacttaaattaaaggattaaggcatacctccaaccattgctcctgcttga |
18481011 |
T |
|
| Q |
131 |
agaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgc |
230 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || |
|
|
| T |
18481010 |
agaagttgaggcttttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatactgatgttaggcttaggcaaccaaaacaaatgaacggc |
18480911 |
T |
|
| Q |
231 |
actcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18480910 |
actcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaa |
18480811 |
T |
|
| Q |
331 |
agaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaatta |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18480810 |
agaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaatta |
18480711 |
T |
|
| Q |
431 |
gggaaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattg |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18480710 |
gggaaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattg |
18480611 |
T |
|
| Q |
531 |
agtattatct |
540 |
Q |
| |
|
|||||||||| |
|
|
| T |
18480610 |
agtattatct |
18480601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 33 - 540
Target Start/End: Complemental strand, 32752881 - 32752374
Alignment:
| Q |
33 |
gtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaag |
132 |
Q |
| |
|
||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
32752881 |
gtaagttatttcataaagaacaaa-gaaataactgtttaaacagcggaaacttaaattaaaggattaaggcataccttcagtcattgctcctgcttgaag |
32752783 |
T |
|
| Q |
133 |
aagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcac |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32752782 |
aagttgaggctcttctaaaccttttacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagagaaccaaaacaaatgaactgcaa |
32752683 |
T |
|
| Q |
233 |
tcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaag |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32752682 |
tcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggctattactaaatttaagggaaag |
32752583 |
T |
|
| Q |
333 |
aataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaatt-caaaataaataacttaattag |
431 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32752582 |
aataaagaccattttctaattaatggataattaccactatgtgcaccaagtgggtaattaccacttatttatttaattaaaaaataaataacttaattag |
32752483 |
T |
|
| Q |
432 |
gg-aaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattg |
530 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32752482 |
ggaaaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaagc-aaaacacacggatcatagcgacaggtcctctttaattg |
32752384 |
T |
|
| Q |
531 |
agtattatct |
540 |
Q |
| |
|
|||||||||| |
|
|
| T |
32752383 |
agtattatct |
32752374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 31 - 444
Target Start/End: Complemental strand, 18475168 - 18474755
Alignment:
| Q |
31 |
atgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttga |
130 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
18475168 |
atgtaagttatttcataaagaacaaaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgcttga |
18475069 |
T |
|
| Q |
131 |
agaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgc |
230 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18475068 |
agaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgc |
18474969 |
T |
|
| Q |
231 |
actcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18474968 |
actcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaattgctcctccactcactcataatgggcagttactaaatttaagggaa |
18474869 |
T |
|
| Q |
331 |
agaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaatta |
430 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18474868 |
agaataaagaccattttctaattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaatta |
18474769 |
T |
|
| Q |
431 |
gggaaaatccaaca |
444 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18474768 |
gggaaaatccaaca |
18474755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 444
Target Start/End: Complemental strand, 21698102 - 21697693
Alignment:
| Q |
30 |
gatgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttg |
129 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
21698102 |
gatgtaagttatttcataaagaacaaaagaaataactgcttaaacagcggaaacttaaattaaaggatcaaggcataccttcagccattgctcctgcttg |
21698003 |
T |
|
| Q |
130 |
aagaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactg |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21698002 |
aagaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaattaaaacaaatgaactg |
21697903 |
T |
|
| Q |
230 |
cactcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaaggga |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21697902 |
cactcctttatataacttctgccatcaagaa----ctgaacgtgcaaaataaaactgctcctccactcactcataatggacagttactaaatttaaggg- |
21697808 |
T |
|
| Q |
330 |
aagaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaatt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
21697807 |
aagaataaagaccattttctgattaatggataattaccactatgtgcacttaatgggtaattaccacttatttatttaattaaaaataaataacttaaat |
21697708 |
T |
|
| Q |
430 |
agggaaaatccaaca |
444 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
21697707 |
agggaaaatccaaca |
21697693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 26416835 - 26416915
Alignment:
| Q |
68 |
cttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttct |
148 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||| || || ||||||| | |||||||||||| |
|
|
| T |
26416835 |
cttaaacaacggaaacttaaattaaaggatcaaggcatacctccaaccattgttcctgtttgaagatggtgaggctcttct |
26416915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 32 - 442
Target Start/End: Complemental strand, 7459098 - 7458688
Alignment:
| Q |
32 |
tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa |
131 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7459098 |
tgtaagttatttcatatagaacaaaagaaataactacttaaacagcggaaatttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaa |
7458999 |
T |
|
| Q |
132 |
gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458998 |
gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcatctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca |
7458899 |
T |
|
| Q |
232 |
ctcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458898 |
ctcctttatataacttctgccatcaaaaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa |
7458799 |
T |
|
| Q |
332 |
gaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaattag |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7458798 |
gaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattag |
7458699 |
T |
|
| Q |
432 |
ggaaaatccaa |
442 |
Q |
| |
|
||||||||||| |
|
|
| T |
7458698 |
ggaaaatccaa |
7458688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 31 - 442
Target Start/End: Complemental strand, 7450957 - 7450546
Alignment:
| Q |
31 |
atgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttga |
130 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7450957 |
atgtaagttatttcatatagaacaaaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttga |
7450858 |
T |
|
| Q |
131 |
agaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgc |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7450857 |
agaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcatctgaatagagatgttaggcttagggaaccaaaacaaatgaactgc |
7450758 |
T |
|
| Q |
231 |
actcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaa |
330 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7450757 |
actcctttatataacttctgctatcaagaagttactgaacgtgcaaaacaaaactgctcatccactcactcataatgggcagttactaaatttaagggaa |
7450658 |
T |
|
| Q |
331 |
agaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaatta |
430 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7450657 |
aaaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaatta |
7450558 |
T |
|
| Q |
431 |
gggaaaatccaa |
442 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7450557 |
gggaaaatccaa |
7450546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 32 - 437
Target Start/End: Complemental strand, 7649610 - 7649206
Alignment:
| Q |
32 |
tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa |
131 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
7649610 |
tgtaagttatttcataaagaacaaac-aaataactacttaaacaacggaaacttaaattaaacgatcaaggcatacctccaaccattgctcctacttgaa |
7649512 |
T |
|
| Q |
132 |
gaa--gttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactg |
229 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7649511 |
gaaaagttgaggctcttctaaaccttccacaatttcactttgatggtgcaagtcttctgaatagagatgttaggtttagggaaccaaaacaaatgaactg |
7649412 |
T |
|
| Q |
230 |
cactcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaaggga |
329 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
7649411 |
cactcctttatataacttctg-catcaagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgagcagttactaaatttaagaga |
7649313 |
T |
|
| Q |
330 |
aagaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaatt |
429 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
7649312 |
aagaataaagaccattttctaattaatagataatta-cactatgtgcacttagctgataattaccacttatttatttaattaaaaataaataacctaatt |
7649214 |
T |
|
| Q |
430 |
agggaaaa |
437 |
Q |
| |
|
|||||||| |
|
|
| T |
7649213 |
agggaaaa |
7649206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 32 - 263
Target Start/End: Complemental strand, 36840010 - 36839781
Alignment:
| Q |
32 |
tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa |
131 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36840010 |
tgtaagttatttcataaataacaaaagaaataactacttaaacagcggaaacttaaatta--ggatcaaggcatacctccagccattgctcctgcttgaa |
36839913 |
T |
|
| Q |
132 |
gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
36839912 |
gaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaactgttgaattgca |
36839813 |
T |
|
| Q |
232 |
ctcctttatataacttctgccatcaagaagtt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36839812 |
agcctttatataacttctgccatcaagaagtt |
36839781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 36835984 - 36835757
Alignment:
| Q |
31 |
atgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttga |
130 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36835984 |
atgtaagttatttcataaataacaaaagaaataactacttaaacagcggaaacttaaatta--ggatcaaggcatacctccagccattgctcctgcttga |
36835887 |
T |
|
| Q |
131 |
agaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgc |
230 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
36835886 |
agaagttgagtctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaattgttgaattgc |
36835787 |
T |
|
| Q |
231 |
actcctttatataacttctgccatcaagaa |
260 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
36835786 |
aagcctttatataacttctgccatcaagaa |
36835757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 36839627 - 36839549
Alignment:
| Q |
434 |
aaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcga |
513 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||| |
|
|
| T |
36839627 |
aaaatccaacattcttccacttggtcgacatattctttcactcatgataataagaaac-aaaacacatggatcatagcga |
36839549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 36835712 - 36835649
Alignment:
| Q |
306 |
tgggcagttactaaatttaagggaaagaat-aaagaccattttctgattaatggataattacca |
368 |
Q |
| |
|
||||||||||||| | || ||||||||||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
36835712 |
tgggcagttactataattgagggaaagaataaaagaccactttctgcttaatgggtaattacca |
36835649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 36839739 - 36839676
Alignment:
| Q |
306 |
tgggcagttactaaatttaagggaaagaat-aaagaccattttctgattaatggataattacca |
368 |
Q |
| |
|
||||||||||||| | || ||||||||||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
36839739 |
tgggcagttactataattgagggaaagaataaaagaccactttctgcttaatgggtaattacca |
36839676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 33 - 417
Target Start/End: Complemental strand, 20125 - 19742
Alignment:
| Q |
33 |
gtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaag |
132 |
Q |
| |
|
||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||||| | ||||||| |
|
|
| T |
20125 |
gtaagttatttcataaagaacaaa-gaaataactacttaaacagcggaaacttaaattaaaggattaaggcataccttccgccattgctcctacttgaag |
20027 |
T |
|
| Q |
133 |
aagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcac |
232 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
20026 |
aagttgaggctcttctaaacattccacaatctcactttgatggtgcaagtcttctgaatagagatgttaggcttagcgaaccaaaacaaatgaactacac |
19927 |
T |
|
| Q |
233 |
tcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaag |
332 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19926 |
tcctttacataacttctgccatcaagaagttagtgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagagaaag |
19827 |
T |
|
| Q |
333 |
aataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaata |
417 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
19826 |
aataaagactattttctgattaatggataattaccaccatgtgcacttagtgggtaattaccacttatatatttaattaaaaata |
19742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 70 - 445
Target Start/End: Complemental strand, 42324 - 41952
Alignment:
| Q |
70 |
taaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacctttcacaatctcactt |
169 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42324 |
taaacagtggaaacttaaatta--ggatcaaggcatatctccagccattgctcctgcttgaagtagttgaggctcttctaaaccttccacaatctcactt |
42227 |
T |
|
| Q |
170 |
tgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagttgcttaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || || |
|
|
| T |
42226 |
tgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaagtgcactcctttatataacttatgccatcaagaagttactgaa |
42127 |
T |
|
| Q |
270 |
cgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgattaatggataattaccac |
369 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42126 |
agtgcaaaataaaactgctcctccactaactcataacgggcagttactaaatttaagggaaagaataaagacaattttctgattaatggataattaccac |
42027 |
T |
|
| Q |
370 |
tatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaattaggg-aaaatccaacat |
445 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||| |
|
|
| T |
42026 |
tatgtgctcttagtgggtaattaccacttatttatttaaat--aaataaataacttaattagggaaaaatccaacat |
41952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 32 - 349
Target Start/End: Complemental strand, 48638982 - 48638665
Alignment:
| Q |
32 |
tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa |
131 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48638982 |
tgtaagttatttcataaagaacaaaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaa |
48638883 |
T |
|
| Q |
132 |
gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48638882 |
gaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttttgaatagagatgttaggcttagggaaccaaaacaaatgaactcca |
48638783 |
T |
|
| Q |
232 |
ctcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48638782 |
ctcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaactgctcctccactcaatcataatgggcagttactaaatttaagggaaa |
48638683 |
T |
|
| Q |
332 |
gaataaagaccattttct |
349 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48638682 |
gaataaagaccattttct |
48638665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 333 - 438
Target Start/End: Complemental strand, 48638528 - 48638423
Alignment:
| Q |
333 |
aataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaattagg |
432 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48638528 |
aataaagaccattttctaattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattagg |
48638429 |
T |
|
| Q |
433 |
gaaaat |
438 |
Q |
| |
|
|||||| |
|
|
| T |
48638428 |
gaaaat |
48638423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 142 - 425
Target Start/End: Complemental strand, 23691738 - 23691459
Alignment:
| Q |
142 |
ctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttata |
241 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| || | ||||| |||||| |||||| ||| ||||| ||||| |||||||| ||||| |
|
|
| T |
23691738 |
ctcttctaaatcttctacaatctcactttgatggtgtaagttttattcatagaaatgttaagcttagagaatcaaaaacaatgagctgcactcttttatc |
23691639 |
T |
|
| Q |
242 |
taacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagac |
341 |
Q |
| |
|
||||| ||||| |||||||| | | | || | ||||||||||||||||||||| | |||| |||||||||||| |||| ||| ||||||||| |
|
|
| T |
23691638 |
-aacttatgccaacaagaagtcaccgtaagcataacaaaaaactgctcctccactcacttaatatggatagttactaaatt-aaggaaaaaaataaagac |
23691541 |
T |
|
| Q |
342 |
cattttctgattaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataactt |
425 |
Q |
| |
|
||||||||||||||| | ||| |||| ||||||||| || |||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
23691540 |
cattttctgattaataggtaactacccctatgtgcatctaatgggtaattatcacttatttatttaaat--aaataaataactt |
23691459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 434 - 523
Target Start/End: Original strand, 51978327 - 51978415
Alignment:
| Q |
434 |
aaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctct |
523 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||||| | ||||||| |
|
|
| T |
51978327 |
aaaatctaacattctcccacttggtcgacatattctttcactcataataataagaaac-aaaacacatggatcatagcgataagtcctct |
51978415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 51983531 - 51983628
Alignment:
| Q |
56 |
aagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacctt |
155 |
Q |
| |
|
||||||||| | ||| |||| |||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51983531 |
aagaaataattatttatacagtggaaacttaaatta--ggatcaaggcatacctcctgccattgcttctgcttgaagaagttgaggctcttctaaacctt |
51983628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 355
Target Start/End: Complemental strand, 23688895 - 23688734
Alignment:
| Q |
196 |
atgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaact--gctcctcc |
293 |
Q |
| |
|
||||||| ||||| |||||||| |||||| ||||| ||||||||||||||||| ||| |||||||| | ||||||||||||||| | || ||| |
|
|
| T |
23688895 |
atgttagatttaggaaaccaaaaacaatgaattgcacacctttatataacttctgtcattaagaagttacggtacgtgcaaaacaaaaaatggttcttcc |
23688796 |
T |
|
| Q |
294 |
actcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgattaa |
355 |
Q |
| |
|
||||| |||| |||| || ||| |||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
23688795 |
actcattcattatggacaattattaaatttaagggaaagaataaagacctttttttgattaa |
23688734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 51977680 - 51977757
Alignment:
| Q |
93 |
aggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacctttcacaatctcacttt |
170 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
51977680 |
aggatcaagacatacctccagctattgctcctgcttaaagaagttgaggttcttctaaaccttccacaatctcacttt |
51977757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 51983631 - 51983701
Alignment:
| Q |
193 |
gagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagtt |
263 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||| |
|
|
| T |
51983631 |
gagatgttaggcttagggaaccaaaactgatgaattgcaagcctttatataacttctgtcatcaagaagtt |
51983701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0763 (Bit Score: 163; Significance: 8e-87; HSPs: 1)
Name: scaffold0763
Description:
Target: scaffold0763; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 351 - 540
Target Start/End: Complemental strand, 2371 - 2184
Alignment:
| Q |
351 |
attaatggataattaccactatgtgcacttagtgggtaattaacacttatttatttaattcaaaataaataacttaattagggaaaatccaacattctcc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2371 |
attaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattagggaaaatccaacat--tcc |
2274 |
T |
|
| Q |
451 |
cacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattgagtattatct |
540 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2273 |
cacttggttgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacagatcctctttaattgagtattatct |
2184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 103 - 370
Target Start/End: Original strand, 28865101 - 28865364
Alignment:
| Q |
103 |
catacctccagccattgctcttgcttgaagaagttgagg-ctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgtta |
201 |
Q |
| |
|
||||||||| ||||||| | ||||||||||| ||| | ||||| |||||||| |||||||||| ||||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
28865101 |
catacctcccgccattgtttttgcttgaagatgtttttgactcttataaaccttccacaatctcattttgacggtgtcagttttctgtatagagatgtta |
28865200 |
T |
|
| Q |
202 |
ggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagttgcttaacgtgcaaaacaaaactgctcctccactcactc |
301 |
Q |
| |
|
|| |||||| |||||||||| |||||| |||| ||||||||||| ||| | || || || || |||||||||| |||||| ||||||||||||||| |
|
|
| T |
28865201 |
ggtttaggggaccaaaacaa-tgaactacacttctttatataacatctactataaaaaaattaaaacacgtgcaaaataaaactactcctccactcactc |
28865299 |
T |
|
| Q |
302 |
ataatgggcagttactaaatttaagggaaagaataaagaccattttctgattaatggataattaccact |
370 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
28865300 |
attatgg----ttactaaatttaagagaaagaataaagaccattttctaatgaatgggtaattaccact |
28865364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 68 - 263
Target Start/End: Complemental strand, 9937432 - 9937237
Alignment:
| Q |
68 |
cttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacctttcacaatctcac |
167 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| | |||||| || || ||||||||| ||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
9937432 |
cttaaacagcagaaacttaagttaaaggatcaaagtatacctacaaccgttgctcttgtttgaagatgttgagactcttctaaaccttccacaatctcac |
9937333 |
T |
|
| Q |
168 |
tttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagtt |
263 |
Q |
| |
|
||||||| |||||| ||||||||| | ||||||| |||||||||||||| | ||||| | || ||||||||||| ||||| | |||||||||| |
|
|
| T |
9937332 |
tttgatgatgtaagatttctgaataaaaatgttagacttagggaaccaaagctgatgaattacaagcctttatataatttctgtcgtcaagaagtt |
9937237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 434 - 495
Target Start/End: Complemental strand, 9937056 - 9936995
Alignment:
| Q |
434 |
aaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaa |
495 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9937056 |
aaaatctaacattctcctatttggtcgacatattctttcactcacaataataagaaacaaaa |
9936995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 35159205 - 35159299
Alignment:
| Q |
139 |
aggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcact |
233 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
35159205 |
aggctcttttaaaccttccacaatctcactttgatagtgtaaatcttttgaatagagttgttaggcttagggaaccaaaactcatgaattgcact |
35159299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 35158775 - 35158828
Alignment:
| Q |
68 |
cttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgct |
121 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
35158775 |
cttaaacaagggaaacttaaattaaaagacaaaggcatacctcccgccattgct |
35158828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 14198 - 14130
Alignment:
| Q |
272 |
tgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaaga |
340 |
Q |
| |
|
||||||| |||||| || |||||||||||| |||| || ||||||||||||||||||| |||||||| |
|
|
| T |
14198 |
tgcaaaataaaactacttatccactcactcagcatggacatttactaaatttaagggaaataataaaga |
14130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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