View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8160_high_3 (Length: 467)
Name: NF8160_high_3
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8160_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Complemental strand, 35622105 - 35621651
Alignment:
| Q |
13 |
attattctatggcggtttagatctgtaattacaagatgtgaaagagcatattttgaggaaattcattttactttatatgcagatggatccagttgacgag |
112 |
Q |
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| T |
35622105 |
attattctatggcggtttagatctgtaattacaagatgtgaaagagcatattttgaggaaattcattttactttatatgcagatggatccagttgacgag |
35622006 |
T |
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| Q |
113 |
gctgacgaactccgttcacttagaagcagtgttcatcttagaaaccactcatccgaagaggactacaccgagaccataaacggcgtggagatcgaaggga |
212 |
Q |
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| T |
35622005 |
gctgacgaactccgttcacttagaagcagtgttcatcttagaaatcactcatccgaagaggactactccgagaccataaacggcgtggagatcgaaggga |
35621906 |
T |
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| Q |
213 |
ccgttgtccaagactcgattttaaagaatgatcatttgatggaaaccgagagcgagtctgcattggttacccctatcacaaggcaattccagatacttgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35621905 |
ccgttgtccaagactcgattttaaagaatgatcatttgatggaaaccgagagcgagtctgcattggttacccctatcacaaggcaattccagatacttgg |
35621806 |
T |
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| Q |
313 |
nnnnnnnctgtccaatcttcaaataccgaaaagaggtcaattgtttgaaggacaagaaaacgagaaagaaagcgccagacaaacttatccgagtttccaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35621805 |
aaaaaaactgtccaatcttcaaataccgaaaagaggtcaattgtttgaaggacaagaaaacgagaaagaaagcgccagacaaacttatccgagtttccaa |
35621706 |
T |
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| Q |
413 |
acagaatctcctacaagtagtggtcaagaaacagaagaagcacttgtatcagagc |
467 |
Q |
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| T |
35621705 |
acagaatctcctacaagtagtgatcaagaaacagaagaagcacttgtatcagagc |
35621651 |
T |
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