View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8160_high_4 (Length: 466)
Name: NF8160_high_4
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8160_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Complemental strand, 35621673 - 35621242
Alignment:
| Q |
13 |
agaagaagcacttgtatcagagctagaacatacagttccaacgaaaaacttcgacgatgataatgacatagaaatcattccagaagaggcaatactcaaa |
112 |
Q |
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| T |
35621673 |
agaagaagcacttgtatcagagctagaacatacagttccaacgaaaaacttcgacgatgataatgacatagaaatcattccagaagaggcaatactcaaa |
35621574 |
T |
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| Q |
113 |
agaatcaactcacataaagaaacgaaatcataccaactagggaagcagttgtctttcaaatggacaactggagctggaccgcgcatcggctgcgtaaggg |
212 |
Q |
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| T |
35621573 |
agaatcaactcacataaagaaacgaaatcataccaactagggaagcagttgtctttcaaatggacaactggagctggaccgcgcatcggctgcgtaaggg |
35621474 |
T |
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| Q |
213 |
actacccttgcgagcttcagtttcgagcactggaacaagttaatctgtctccaagaagcggatcacgcacgaaatcgtcattttctcttaggagcaccac |
312 |
Q |
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| T |
35621473 |
actacccttgcgagcttcagtttcgagcactggaacaagttaatctgtctccaagaagcggatcacgcacaaaatcgtcattttctcttaggagcaccac |
35621374 |
T |
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| Q |
313 |
tagtttgaactcaaatgtttcatgcctttcgtgtttaagcggcgatgcaacaactgaaccactacttgttgaagataaaagtatgactccaagatcagaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35621373 |
tagtttgaactcaaatgtttcatgcctttcgtgtttaagcggcgatgcaacaactgaaccactacttgttgaagataaaagtatgactccaagatcagaa |
35621274 |
T |
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| Q |
413 |
ttctctccgttgacaagaggaacatcagtgat |
444 |
Q |
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| T |
35621273 |
ttctctccgttgacaagaggaacatcagtgat |
35621242 |
T |
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