View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8160_high_5 (Length: 461)

Name: NF8160_high_5
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8160_high_5
NF8160_high_5
[»] chr5 (1 HSPs)
chr5 (13-443)||(27898178-27898612)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 443
Target Start/End: Original strand, 27898178 - 27898612
Alignment:
Q  13 gagaagaagagggatcttcaagaaagctgaggagctttcgattttgtgtgatgctgaagttggtcttgttattttctcaacaactgggaaattatatgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  27898178 gagaagaagagggatcttcaagaaagctgaggagctttcgattttgtgtgatgctgaggttggtcttgttattttctcaacaactgggaaactatatgaa 27898277  T
Q  113 tatgccagttccaagtacgtacggctttaataatttaatttgcact-tttttaaatcatgtttgaactttgctaaatatgtgcttcttgtcagtgatatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27898278 tatgccagttccaagtacgtacggctttaataatttaattttcactattttttaatcatgtttgaactttgctaaatatgtgcttcttgtcagtgatatt 27898377  T
Q  212 tttatg---cttcatttctgggttggaggaaaatttaagataataaagacaaagatgtaccagatattaggaacaataacacattacccctgccttnnnn 308  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        
T  27898378 tttatgcttcttcatttctgggttggaggaaaatttaagataataaagacaaagatgtaccagatattaggaacaataacccattacccctgccttaaaa 27898477  T
Q  309 nnncacatttcctcaacaaaaataagggaattacaactcacgttttttaacttcattaatagttcattgaagcnnnnnnnnnnnnggagccttggagggg 408  Q
       ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||            |||||||| |||| |    
T  27898478 aaacacatttcctcaacaaaaataagggaattacaactcacgtttttttacttcatttatagttcattgaagcttttttatttttggagccttagaggtg 27898577  T
Q  409 taagggtggttatgatatgacatgcgggaaaatag 443  Q
    |||||||||||||||||||||||||||||||||||    
T  27898578 taagggtggttatgatatgacatgcgggaaaatag 27898612  T

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