View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8160_low_1 (Length: 618)
Name: NF8160_low_1
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8160_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 16 - 604
Target Start/End: Complemental strand, 38631861 - 38631274
Alignment:
| Q |
16 |
aatacatccatggcattggtggtagaatggtacgactttgtgtgttttgcaattgttggagtgtccatcctaggtgccttatgggttctgtggacaaacg |
115 |
Q |
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| T |
38631861 |
aatacatccatggcattggtggtagaatggtacgactttgtgtgttttgcaattgttggagtgtccatcctaggtgccttatgggttctgtggacaaacg |
38631762 |
T |
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| Q |
116 |
aagggtcctcgacctctcaaagcgattctaacatctttgtcgagagccttctggtggctaattcacctttgtcggacaatagagtggccataggtcatgt |
215 |
Q |
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| T |
38631761 |
aagggtcctcgacctctcaaagcgattctaacatctttgtcgagagccttctggtggctaattcaccttcgtcggacaatagagtggccataggtcatgt |
38631662 |
T |
|
| Q |
216 |
gagcacctcccagctatggaccagctgttgttggcgaggagtgcaccctcttgtgctgttaactacgcgcttgttttcctttgtcagcttagccgtgcta |
315 |
Q |
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| T |
38631661 |
gagcacctcccagctatggaccagct---gttggcgaggagtgcaccctcttgtgctgttaactacgcgtttgttttcctttgtcagcttagccatgcta |
38631565 |
T |
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| Q |
316 |
ttatacttggatattcatgagtacgatgcaagtattttttactactatacagagtaagtcctctttacttccaattgttccttggcactt--atgattct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
38631564 |
ttatacttggatattcatgagtacgatgcaagtattttttactactatacagagtaagtcctctttacttccaattgttccttggcgctttcatgattct |
38631465 |
T |
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| Q |
414 |
tgttctttgaacatatgaacgtgttgcctttatttttatgcagatggactttcacattagtaatgatatactttgcggtgagtgatcatctcaatgcttt |
513 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38631464 |
tgttctttgaccatatgaacatgttgcctttatttttatgcagatggactttcacattagtaatgatatactttgcggtgagtgatcatctcaatgcttt |
38631365 |
T |
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| Q |
514 |
aacattagttgtattcatagtaacataattccctacaacactcaggaaccaaaatgaattacgatttactaaccatgtgactggttgtatt |
604 |
Q |
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| T |
38631364 |
cacattagttgtattcatagtaacataattccctacaacactcaggaaccaaaatgaattacgatttactaaccatgtgactggttgtatt |
38631274 |
T |
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