View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8160_low_11 (Length: 309)
Name: NF8160_low_11
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8160_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 32177512 - 32177802
Alignment:
| Q |
1 |
gggtggtgaaagtgaagagatcaatgaaggaagaaggtgggtggagttgcgaagggtttggactcgaaggaaaaaagggtcaacggagatggaagaagaa |
100 |
Q |
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| T |
32177512 |
gggtggtgaaagtgaagagatcaatgaaggaagaaggtgggtggagttgcgaagggtttggactcgaaggaaaaaagggtcaacggagatggaagaagaa |
32177611 |
T |
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| Q |
101 |
ggtggtggaggtggaaggttaaatgggacacggttaacttgagggaaacaagagtgaaagtgatcaaggagttgtgattctgcaagagaaacagtgggaa |
200 |
Q |
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| T |
32177612 |
ggtggtggaggtggaaggttaaatgggacacggttaacttgagggaaacaagagtgaaagtgatcaaggagttgtgattctgcaagagaaacagtgggaa |
32177711 |
T |
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| Q |
201 |
gaggagtgatgagagtgactttgcaattgttgttgagaaacaatgatgctagtcttaggaatggtgtgagatgacccattcctgcacttgg |
291 |
Q |
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| T |
32177712 |
gaggagtgatgagagtgactttgcaattgttgttgagaaacaatgatgctagtcttaggaatggtgtgagatgacccattccagcacttgg |
32177802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 32184679 - 32184963
Alignment:
| Q |
1 |
gggtggtgaaagtgaagagatcaatgaaggaagaaggtgggtggagttgcgaagggtttggactcgaaggaaaaaagggtcaacggagatggaagaagaa |
100 |
Q |
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| T |
32184679 |
gggtggtgaaagtgaagagatcaaaggaggaagaaggttggtggagtcgcgaagggtttgaactctatggaaaaaaggatcaacaac------agaatca |
32184772 |
T |
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| Q |
101 |
ggtggtggaggtggaaggttaaatgggacacggttaacttgagggaaacaagagtgaaagtgatcaaggagttgtgattctgcaagagaaacagtgggaa |
200 |
Q |
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| T |
32184773 |
ggagaagaaggttgaagatgaaatgggatgaagttgacttgagggaaagaagagtgaaagtgatcaagaagctgggattctgcaagagagacagtgggaa |
32184872 |
T |
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| Q |
201 |
gaggagtgatgagagtgactttgcaattgttgttgagaaacaatgatgctagtcttaggaatggtgtgagatgacccattcctgcacttgg |
291 |
Q |
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| T |
32184873 |
gaggagtgatgagagtgactttgcaattgttgttaagaaacaatgatgctagtcttaggaatggtgtgagatgacccattccagcacttgg |
32184963 |
T |
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