View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8160_low_13 (Length: 291)
Name: NF8160_low_13
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8160_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 39810948 - 39810686
Alignment:
| Q |
12 |
gacatcaaacccatcataaagtccccattgttcatcaatttcttgtcttgtactagtgatgacaagttctgcagcatccagggaaagctcttctgcttct |
111 |
Q |
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| T |
39810948 |
gacatcaaacccatcataaagtccccattgttcatcaatttcttgtcttgtactagtgatgacaagttctgcagcatccagggaaagctcttctgcttct |
39810849 |
T |
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| Q |
112 |
atccttctcattatcttatacgttgaattgatatcctcccaagattggcgcccttgcttaagaagttgttctagtttgtttcttccaagtgaatgaccag |
211 |
Q |
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| T |
39810848 |
atccttctcattatcttatacgttgaattgatatcctcccaagattggcgcccttgcttaagaagttgttctagtttgtttcttccaagtgaatgaccag |
39810749 |
T |
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| Q |
212 |
tgagaaccattggcacattcaaagcacccgaaagaagagcagcactgtcaccagcatcagcat |
274 |
Q |
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| T |
39810748 |
tgagaaccattggcacattcaaagcacctgaaagaagagcagcactgtcaccagcatcagcat |
39810686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 15798319 - 15798059
Alignment:
| Q |
12 |
gacatcaaacccatcataaagtccccattgttcatcaatttcttgtcttgtactagtgatgacaagttctgcagcatccagggaaagctcttctgcttct |
111 |
Q |
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|||||| || ||||||||||||||||| || || |||||||||||| |||||||||| || ||||||||||||||||| |||||||| |||||||||||| |
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| T |
15798319 |
gacatcgaatccatcataaagtccccactgctcctcaatttcttgttttgtactagtaataacaagttctgcagcatcaagggaaagttcttctgcttct |
15798220 |
T |
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| Q |
112 |
atccttctcattatcttatacgttgaattgatatcctcccaagattggcgcccttgcttaagaagttgttctagtttgtttcttccaagtgaatgaccag |
211 |
Q |
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| T |
15798219 |
atcctcctcatcatcttatacattgaattgatatcttccttcgactggcgtccttgcttaagaagttgttcgagcttgtttcttccaagcgaatgaccgg |
15798120 |
T |
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| Q |
212 |
tgagaaccattggcacattcaaagcacccgaaagaagagcagcactgtcaccagcatcagc |
272 |
Q |
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| || ||||| || ||||| |||||||||||||||| ||||||||| || || |||||||| |
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| T |
15798119 |
tcagcaccatcggtacatttaaagcacccgaaagaatagcagcactatctccggcatcagc |
15798059 |
T |
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