View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8160_low_14 (Length: 271)
Name: NF8160_low_14
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8160_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 32255253 - 32255003
Alignment:
| Q |
2 |
aaaagccactgaaatgatttaaacattaatggttacttgaatgctcttactctagtatttggctgagttcaaatacttggaaggtaaatattgaactttc |
101 |
Q |
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| T |
32255253 |
aaaaggcactaaaatgatttaaacattaatggttacttgaatgctcttactctagtatttggctgagttcaaatacttgcaaggtaaatattgaactttc |
32255154 |
T |
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| Q |
102 |
agagaataaattttaacatcaccagtcaccaccctttctgttctgctcttctgttttgaaagctacatctatgcatttaagtttgagcaacatggtttgt |
201 |
Q |
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| T |
32255153 |
agagaataaattttaacatcaccagtcactaccctttctgttctgctcttctgttttgaaagctacatctatgcatttaagtttgagcaacatggtttgt |
32255054 |
T |
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| Q |
202 |
gcttaatcaagactgtaaatgaactaattaaagtgaaaaagaagtactgat |
252 |
Q |
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| T |
32255053 |
gcttaatcaagactgtaaatgaactaattaaagtgaaaaagaagtactgat |
32255003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 32250625 - 32250577
Alignment:
| Q |
69 |
ttcaaatacttggaaggtaaatattgaactttcagagaataaattttaa |
117 |
Q |
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| T |
32250625 |
ttcaaataactggaaggtaaatattgaactttcagagcataaattttaa |
32250577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 32244606 - 32244519
Alignment:
| Q |
165 |
tacatctatgcatttaagtttgagcaacatggtttgtgcttaatcaagactgtaaatgaactaattaaagtgaaaaagaagtactgat |
252 |
Q |
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| T |
32244606 |
tacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaagaagtaatgat |
32244519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 32244870 - 32244832
Alignment:
| Q |
79 |
tggaaggtaaatattgaactttcagagaataaattttaa |
117 |
Q |
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||||||||||||| ||||||||||||| ||||||||||| |
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| T |
32244870 |
tggaaggtaaatactgaactttcagagcataaattttaa |
32244832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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