View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8160_low_17 (Length: 240)
Name: NF8160_low_17
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8160_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17753421 - 17753199
Alignment:
| Q |
1 |
tttcgagtttcccacataaacaaggtttccatacttactaaaacatgcagcattaggtgtgaaggaggtacttccatcggaacccttgttgcgtgagaca |
100 |
Q |
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| T |
17753421 |
tttcgagtttcccatataaacaaggtttccatacttactaaaacatgcagcagtaggtgtgaaggaggtacttccatcggaacccttgttgcgtgaggca |
17753322 |
T |
|
| Q |
101 |
gggtttggtccacttggtttgtcagagacagaaacttgaagataagttgtattttcagtgtttaagtcaacaatcatcggactacgggacaaaggacaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17753321 |
gggtttggtccacttggtttgtcagagacagaaacttgaagataagttgtattttcagtgtttaagtcaacaatcatcggactacgggacagaggacaca |
17753222 |
T |
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| Q |
201 |
ccaagcagagagatggtttggag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
17753221 |
ccaagcagagagatggtttggag |
17753199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17762408 - 17762186
Alignment:
| Q |
1 |
tttcgagtttcccacataaacaaggtttccatacttactaaaacatgcagcattaggtgtgaaggaggtacttccatcggaacccttgttgcgtgagaca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17762408 |
tttcgagtttcccatataaacaaggtttccatacttactaaaacatgcagcagtaggtgtgaaggaggtacttccatcggaacccttgttgcgtgaggca |
17762309 |
T |
|
| Q |
101 |
gggtttggtccacttggtttgtcagagacagaaacttgaagataagttgtattttcagtgtttaagtcaacaatcatcggactacgggacaaaggacaca |
200 |
Q |
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| T |
17762308 |
gggtttggtccacttggtttgtcagagacagaaacttgaagataagttgtattttcagtgtttaagtcaacaatcatcggactacgggacagaggacaca |
17762209 |
T |
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| Q |
201 |
ccaagcagagagatggtttggag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
17762208 |
ccaagcagagagatggtttggag |
17762186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17739273 - 17739051
Alignment:
| Q |
1 |
tttcgagtttcccacataaacaaggtttccatacttactaaaacatgcagcattaggtgtgaaggaggtacttccatcggaacccttgttgcgtgagaca |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
17739273 |
tttcgagtttcccacataaacaaggtttccatacttactaaaacatgctgcagtaggtgtgaaggaggtacttccatcagaacccttgttgcgtgaggca |
17739174 |
T |
|
| Q |
101 |
gggtttggtccacttggtttgtcagagacagaaacttgaagataagttgtattttcagtgtttaagtcaacaatcatcggactacgggacaaaggacaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || | ||||||| |
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| T |
17739173 |
gggtttggtccacttggtttgtcagagacagaaacttgaagataagttgtattttcagtgtttaagtcaacaatcattggagcacgtgagagaggacacg |
17739074 |
T |
|
| Q |
201 |
ccaagcagagagatggtttggag |
223 |
Q |
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||||||||||||||| ||||||| |
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| T |
17739073 |
ccaagcagagagatgatttggag |
17739051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15735378 - 15735160
Alignment:
| Q |
1 |
tttcgagtttcccacataaacaaggtttccatacttactaaaacatgcagcattaggtgtgaaggaggtacttccatcggaacccttgttgcgtgagaca |
100 |
Q |
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|
|||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||| || |
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| T |
15735378 |
tttcgagtttcctacataaaccaggtttccatacttactaaaacatgcagcagtaggtgtgaaggaggtgcttccatcagaacacttgttgcgtgaggca |
15735279 |
T |
|
| Q |
101 |
gggtttggtccacttggtttgtcagagacagaaacttgaagataagttgtattttcagtgtttaagtcaacaatcatcggactacgggacaaaggacaca |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | || | ||||||| |
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| T |
15735278 |
gggtttggtccacttggtttctcagagacagaaacttgaagataaattgtattttcagtgtttaagtcaacaatcattggagcgcatgagagaggacacg |
15735179 |
T |
|
| Q |
201 |
ccaagcagagagatggttt |
219 |
Q |
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||||||||||||||||||| |
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| T |
15735178 |
ccaagcagagagatggttt |
15735160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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