View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8160_low_3 (Length: 487)
Name: NF8160_low_3
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8160_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11617634 - 11617405
Alignment:
| Q |
1 |
tcaacatgcatgactttgggtggtgaatgatccattggattttcctgatgaggaggaataagggcagggtcccaacagacaaagtagatatctccatcca |
100 |
Q |
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| T |
11617634 |
tcaacatgcatgactttaggtggtgaatgatccattggattttcctgatgaggaggaataagggcagggtcccaacagacaaagtagatatctccatcca |
11617535 |
T |
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| Q |
101 |
aatcacttcctgaacattcattaggatgtggtctacacaagaaatcactttgaagtcagaaaacatcatcatacacataatgaatataatcttcgctatc |
200 |
Q |
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| T |
11617534 |
aatcacttcctgaacattcattaggatgtggtctacacaagaaatcactttgaagtcagaaaacatcatcatacgcataatgaatataatcttcgctatc |
11617435 |
T |
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| Q |
201 |
aatcttctaaagtggtatatttgcagggac |
230 |
Q |
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| T |
11617434 |
aatcttctaaagtggtatatttgcatggac |
11617405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 268 - 471
Target Start/End: Complemental strand, 11617405 - 11617202
Alignment:
| Q |
268 |
cgattttgtaacagatgattgaatggataggaaatatattaaacctatactattttactcatacctagctatattatcaactgcaaaatatagttacatt |
367 |
Q |
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| T |
11617405 |
cgattttgtaacaaatgattgaatggataggaaatatattaaacctatactattttactcatacctagctatattatcaactgcaaaatatagttacatt |
11617306 |
T |
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| Q |
368 |
aagttatgttgtttttgaaacaaatgttgaatggataagaaatttatggaatcttaaataaaatcttaccttctccccttctgtgggaaaacaacacaat |
467 |
Q |
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| T |
11617305 |
aagttatgttgtttttgaaacaaatgttgaatggataagaaatttatggaatcttaaataaaatcttaccttctccccttctgtgggaaaacaacacaat |
11617206 |
T |
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| Q |
468 |
ctac |
471 |
Q |
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|||| |
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| T |
11617205 |
ctac |
11617202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 11630461 - 11630400
Alignment:
| Q |
70 |
tcccaacagacaaagtagatatctccatccaaatcacttcctgaacattcattaggatgtgg |
131 |
Q |
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|||||||| ||||||||||| || || || | ||||||||| ||||||||||| |||||||| |
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| T |
11630461 |
tcccaacaaacaaagtagatgtccccgtctagatcacttccggaacattcatttggatgtgg |
11630400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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