View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8160_low_7 (Length: 461)

Name: NF8160_low_7
Description: NF8160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8160_low_7
NF8160_low_7
[»] chr6 (1 HSPs)
chr6 (16-447)||(14835328-14835760)
[»] chr1 (2 HSPs)
chr1 (185-248)||(31362934-31362997)
chr1 (198-226)||(18657014-18657042)
[»] chr2 (3 HSPs)
chr2 (196-272)||(30873240-30873317)
chr2 (254-308)||(41687211-41687265)
chr2 (275-308)||(9680291-9680324)
[»] chr7 (1 HSPs)
chr7 (198-226)||(13010164-13010192)
[»] chr5 (1 HSPs)
chr5 (198-226)||(20700303-20700331)
[»] chr4 (1 HSPs)
chr4 (198-226)||(29575415-29575443)


Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 14835328 - 14835760
Alignment:
Q  16 atgaacattgataaatatctaacactgacaacaatgaaggacataaatattaaacac-gaccaaacaaaatcggctcaaccaacaaaaacataaaattat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14835328 atgaacattgataaatatctaacactgacaacaatgaaggacataaatattaaacaccgaccaaacaaaatcggctcaaccaacaaaaacataaaattat 14835427  T
Q  115 agtcaattacattatatgactaacaaaatcttcattgttgcgcttaatataaatatattttgaagcaacacaaactcatggtatttcattcataataata 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14835428 agtcaattaccttatatgactaacaaaatcttcattgttgcgcttaatataaatatattttgacgcaacacaaactcatggtatttcattcataataata 14835527  T
Q  215 gtagcaatacaactggagataatatcaaaataacacggtaagcatgggacatagctgcccttgcaagagcatgggcgcttccgtttgcttgacgtatatc 314  Q
    |||||||||||||||  |||| |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  14835528 gtagcaatacaactgaggatagtatcaaaataacaccgtaagcatgcgacatagctgcccgtgcaagagcatgggcgcttccgtttgcttgacgtctatc 14835627  T
Q  315 aaaaataacatcataatccattacatatagttaggaatctctttcttagtcatgtagcgtaccaatatgggacttatacgaaacactttgttttttctta 414  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  14835628 aaaaataacatcataatccattacatatagttaggaagctctttcttagtcatgtagcgtaccgatatgggacttacaggaaacactttgttttttctta 14835727  T
Q  415 cggaacaatggatagtggagggtttgggaaact 447  Q
    |||||||||||||||||||||||||||| ||||    
T  14835728 cggaacaatggatagtggagggtttggggaact 14835760  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 31362934 - 31362997
Alignment:
Q  185 caaactcatggtatttcattcataataatagtagcaatacaactggagataatatcaaaataac 248  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| |  ||||||||||||||||    
T  31362934 caaactcatggtatttcaatcataataataatagaaatacaactaggaataatatcaaaataac 31362997  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 18657014 - 18657042
Alignment:
Q  198 tttcattcataataatagtagcaatacaa 226  Q
    |||||||||||||||||||||||||||||    
T  18657014 tttcattcataataatagtagcaatacaa 18657042  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 30873240 - 30873317
Alignment:
Q  196 tatttcattcataataatagtagcaatacaactggagataatatcaaaataac-acggtaagcatgggacatagctgc 272  Q
    ||||||||||||||||||||| ||| ||||||| |  ||||||||||||||||   ||||||||||||| ||||||||    
T  30873240 tatttcattcataataatagttgcagtacaactaggaataatatcaaaataactgtggtaagcatgggatatagctgc 30873317  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 41687211 - 41687265
Alignment:
Q  254 aagcatgggacatagctgcccttgcaagagcatgggcgcttccgtttgcttgacg 308  Q
    ||||||| || | ||||| | ||||||||||||| ||||||||||||||||||||    
T  41687211 aagcatgagataaagctgtctttgcaagagcatgagcgcttccgtttgcttgacg 41687265  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 9680324 - 9680291
Alignment:
Q  275 ttgcaagagcatgggcgcttccgtttgcttgacg 308  Q
    ||||||||||||| ||||||||||||||||||||    
T  9680324 ttgcaagagcatgagcgcttccgtttgcttgacg 9680291  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 13010164 - 13010192
Alignment:
Q  198 tttcattcataataatagtagcaatacaa 226  Q
    |||||||||||||||||||||||||||||    
T  13010164 tttcattcataataatagtagcaatacaa 13010192  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 20700331 - 20700303
Alignment:
Q  198 tttcattcataataatagtagcaatacaa 226  Q
    |||||||||||||||||||||||||||||    
T  20700331 tttcattcataataatagtagcaatacaa 20700303  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 29575415 - 29575443
Alignment:
Q  198 tttcattcataataatagtagcaatacaa 226  Q
    |||||||||||||||||||||||||||||    
T  29575415 tttcattcataataatagtagcaatacaa 29575443  T

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