View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8161_high_1 (Length: 584)

Name: NF8161_high_1
Description: NF8161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8161_high_1
NF8161_high_1
[»] chr7 (4 HSPs)
chr7 (18-295)||(21971349-21971625)
chr7 (367-572)||(21971069-21971277)
chr7 (18-96)||(31166984-31167063)
chr7 (18-77)||(27596013-27596072)
[»] chr2 (3 HSPs)
chr2 (18-96)||(39865328-39865407)
chr2 (18-96)||(29770779-29770858)
chr2 (18-77)||(4329630-4329690)
[»] chr8 (2 HSPs)
chr8 (18-96)||(26759216-26759295)
chr8 (18-79)||(146665-146727)
[»] chr5 (1 HSPs)
chr5 (18-96)||(39121864-39121943)
[»] chr3 (2 HSPs)
chr3 (18-96)||(23566919-23566998)
chr3 (18-96)||(39737754-39737833)
[»] chr4 (5 HSPs)
chr4 (18-96)||(28103811-28103890)
chr4 (18-77)||(38147423-38147483)
chr4 (18-60)||(917726-917768)
chr4 (18-77)||(12639751-12639811)
chr4 (18-81)||(28104362-28104425)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 21971625 - 21971349
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagatcatttatttaattattatttattggtcctcggggcaccggtttacattgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |||| |||| ||||||    
T  21971625 ttaattagttgacatatattatactttaattgagatgagttaagtgagatcatttatttaattattatttattgttccttggg-cacccgtttgcattgc 21971527  T
Q  118 ccaaattgatttacagtttaaagaaattgaggatggtaaacataactaggcttcgtaaattcctcccatcgtgtttttaatgcttaccccttagcaaaag 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21971526 ccaaattgatttacagtttaaagaaatagaggatggtaaacataactaggcttcgtaaattcctcccatagtgtttttaatgcttaccccttagcaaaag 21971427  T
Q  218 tcaaaagtattaaaattaagttattgctatttctatttttgatattaagagtacacgtgattcttcttcccccttaag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21971426 tcaaaagtattaaaattaagttattgctatttctatttttgatattaagagtacacgtgattcttcttcccccttaag 21971349  T

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Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 367 - 572
Target Start/End: Complemental strand, 21971277 - 21971069
Alignment:
Q  367 gtgatagtcaactcctatgcaaaaagtcaactctattcatttttgaactttgaataagatagcaacattactacacataaagttcaaagcaactttgatt 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21971277 gtgatagtcaactcctatgcaaaaagtcaactctattcatttttgaactttgaataagatagcaacattactacacataaagttcaaaacaactttgatt 21971178  T
Q  467 gc---attgcactatccaatgggtaacaaaatcagcaatttgtgcctttgttctgccggcaccggagatatctccggcaggttacaaaacacctttacct 563  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21971177 gcattattgcactatccaatgggtaacaaaatcagcaatttgtgcctttgttctgccggcaccggagatatctccggcaggttacaaaacacctttacct 21971078  T
Q  564 tgatgtcca 572  Q
    || ||||||    
T  21971077 tgttgtcca 21971069  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 31166984 - 31167063
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggaga-tcatttatttaattattatttattggtcct 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| ||||    
T  31166984 ttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgttcct 31167063  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 27596072 - 27596013
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagat-catttattta 77  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||| ||||| ||||||||||    
T  27596072 ttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttattta 27596013  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 39865328 - 39865407
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggaga-tcatttatttaattattatttattggtcct 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| ||||    
T  39865328 ttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgttcct 39865407  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 29770858 - 29770779
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggaga-tcatttatttaattattatttattggtcct 96  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||| ||||||||| ||||    
T  29770858 ttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactatttattgttcct 29770779  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 4329690 - 4329630
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagatc-atttattta 77  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| |||||| |||||||||    
T  4329690 ttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttattta 4329630  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 26759295 - 26759216
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagat-catttatttaattattatttattggtcct 96  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||| ||||    
T  26759295 ttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactatttattgttcct 26759216  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 146727 - 146665
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagat-catttatttaat 79  Q
    ||||||||||||||||||||| |||||||||||||| | | ||| ||||| ||||||||||||    
T  146727 ttaattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaat 146665  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 39121864 - 39121943
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggaga-tcatttatttaattattatttattggtcct 96  Q
    |||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||| ||||||||| ||||    
T  39121864 ttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactatttattgttcct 39121943  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 23566919 - 23566998
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggaga-tcatttatttaattattatttattggtcct 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||||| ||||||||| ||||    
T  23566919 ttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactatttattgttcct 23566998  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 39737754 - 39737833
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagatc-atttatttaattattatttattggtcct 96  Q
    |||||||||| |||||||||||| |||||||||||||| ||||   ||||| ||||||||||||| ||||||||| ||||    
T  39737754 ttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactatttattgttcct 39737833  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 28103890 - 28103811
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagat-catttatttaattattatttattggtcct 96  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||| ||||| |||||||||||| ||||||||||| ||||    
T  28103890 ttaattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattatttattgttcct 28103811  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 38147483 - 38147423
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagat-catttattta 77  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||    
T  38147483 ttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttattta 38147423  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 917768 - 917726
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaa 60  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  917768 ttaattagttgacatatattacactttaattgagatgaattaa 917726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 12639751 - 12639811
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagat-catttattta 77  Q
    ||||||||||||||||| ||| |||||||||||| ||| ||||| ||||| ||||||||||    
T  12639751 ttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttattta 12639811  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 28104362 - 28104425
Alignment:
Q  18 ttaattagttgacatatattatactttaattgagatgagttaagggagat-catttatttaatta 81  Q
    |||||||||||| |||| ||| | |||||||||||||| ||||| ||||| ||||||||||||||    
T  28104362 ttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttatttaatta 28104425  T

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