View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8161_low_1 (Length: 694)
Name: NF8161_low_1
Description: NF8161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8161_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 34 - 677
Target Start/End: Original strand, 35107229 - 35107878
Alignment:
| Q |
34 |
ttttgtttgttttgtaatgcttactttgtttgtgatgtctgtgcaagaaatctatgatg-----atgtaatatgtgagatgttaatccataaatgaataa |
128 |
Q |
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| T |
35107229 |
ttttggttgttttgtaatgcttactttgtttgtgatgtctgtgcaaggaatacttggtgttataatgtaatatgtgagatgttaatccataaatgaataa |
35107328 |
T |
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| Q |
129 |
gtaaacagttgttattcttcttggtgttatattagtatttgtattccaaggaatacttggtgttatacatagttggccttatactttgtaaaccattttc |
228 |
Q |
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| T |
35107329 |
gtaaacagttgttattcttcttggtgttatattagtatttgtattccaaggaatacttggtgttatacttagttggccttatactttgtaaaccattttc |
35107428 |
T |
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| Q |
229 |
aagacagacttttaatgagctcaatggcagatgacattggtactgtaactaattgtcattaaaattatgtattcctcgctttgtttcatatgagagtttg |
328 |
Q |
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| T |
35107429 |
aagacagacttttaatgagctcaatggcagatgaaattggtactgtaactgattgtcattaaaattatgtattcctcgctttgtttcatatgagagtttg |
35107528 |
T |
|
| Q |
329 |
aaagtacgtttctcagccaaatggcttcgactatagcagctttaacttcatattcgatttcaattgtgttttgattcactacatcttgccttcttgcttc |
428 |
Q |
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| T |
35107529 |
aaagtacgtttctcagccaaatggctttgactatagcagctttaacttcatattcgatttcaattatgttttgattcactacatcttgccttcttgcttc |
35107628 |
T |
|
| Q |
429 |
tctagacaacgtgaaacatactacctgatccaaagcagattattattatatatgaaattgttagagagtacttgttacggtaatctgcagctccataaac |
528 |
Q |
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| T |
35107629 |
tctagacaacgtgaaacatactacctgatccaaagcagattattattatatatgaaattgttagagagtacttgttacggtaatctgcagctccataaac |
35107728 |
T |
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| Q |
529 |
atacctcataatttcctttgcaggatgtatgattcttgaaagtatgcttatagatatctgtctggatgtagttaaatgcgtttcttttttg-aaagctaa |
627 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35107729 |
atacctcataatttcctttgcacaatgtatgattcttgaaagtatgcttatagatatctgtctggatgtagttaaatgcgtttcttttttgaaaagctaa |
35107828 |
T |
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| Q |
628 |
aaacgtcattaatactatggtgaccagaccagttgagcacaagttgtgcc |
677 |
Q |
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| T |
35107829 |
aaacgtcattaatactatggtgaccagaccagttgagcacaagttgtgcc |
35107878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 35107180 - 35107214
Alignment:
| Q |
7 |
aactcagaacaagctttgttactcgtcttttgttt |
41 |
Q |
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| T |
35107180 |
aactcagaacaagctttgttactcgtcttttgttt |
35107214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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