View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8161_low_20 (Length: 236)
Name: NF8161_low_20
Description: NF8161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8161_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 53063348 - 53063554
Alignment:
| Q |
14 |
ataattctatatgtgtagctttattgttttattcgaatcaatggtgtttcaaagacaataactctgccttattttgtcctctatgtcgtatacattttca |
113 |
Q |
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| T |
53063348 |
ataattctatatgtgtagctttattgttttattcgagtcgatggtgtttcaaagacaataactctgccttattttgtcctctatgtcgtatacattttca |
53063447 |
T |
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| Q |
114 |
attatgtattggctttcatgcaattaaaatcctttctagttcctctcaacttttacttttcctttcagtttcttaccaattgttttttagtttagttatc |
213 |
Q |
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| T |
53063448 |
attatgcattggctttcatgcaattaaaatccattctagttcctctcaacttttacttttcctttcattttcttaccaattgttttttagtttagttatc |
53063547 |
T |
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| Q |
214 |
ttgatca |
220 |
Q |
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||||||| |
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| T |
53063548 |
ttgatca |
53063554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 53060409 - 53060572
Alignment:
| Q |
51 |
tcaatggtgtttcaaagacaataactctgccttattttgtcctctatgtcgtatacattttcaattatgtattggctttcatgcaattaaaatcctttct |
150 |
Q |
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| T |
53060409 |
tcaatggtgtttgaaagacaataactctgccttattttgtcctctatgtcgtttacattttcaattatgtattggctttcatgcaactaaaatccattcc |
53060508 |
T |
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| Q |
151 |
agttcctctcaacttttacttttcctttcagtttcttaccaattgttttttagtttagttatct |
214 |
Q |
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| T |
53060509 |
agtacctctcaacttttacttttcctttcattttcttactgattgttttttattttagttatct |
53060572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 37419672 - 37419819
Alignment:
| Q |
54 |
atggtgtttcaaagacaataactctgccttattttgtcctctatgtcgtatacattttcaattatgtattggctttcatgcaattaaaatcctttctagt |
153 |
Q |
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| T |
37419672 |
atggtgtttgtaagacaataactctgccttattttgccctctatgtcgtatacgttttcaattatgtattggttttcatgcaactaaaatccattcttgc |
37419771 |
T |
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| Q |
154 |
tcctctcaacttttacttttcctttcagtttcttaccaattgtttttt |
201 |
Q |
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| T |
37419772 |
tcctctcgacttttacttttcctttctttttcttaccgattgtttttt |
37419819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 53076411 - 53076503
Alignment:
| Q |
54 |
atggtgtttcaaagacaataactctgccttattttgtcctctatgtcgtatacattttcaattatgtatt---ggctttcatgcaattaaaat |
143 |
Q |
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| T |
53076411 |
atggtgtttgaaagacaataactctgccttattttttcctctatgttatatgcattttcaattatgtactggcggctttcatgcaattaaaat |
53076503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 53340487 - 53340455
Alignment:
| Q |
54 |
atggtgtttcaaagacaataactctgccttatt |
86 |
Q |
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| T |
53340487 |
atggtgtttgaaagacaataactctgccttatt |
53340455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 54 - 214
Target Start/End: Original strand, 34036725 - 34036879
Alignment:
| Q |
54 |
atggtgtttcaaagacaataactctgccttattttgtcctctatgtcgtatacattttcaattatgtattggctttcatgcaattaaaatcctttctagt |
153 |
Q |
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| T |
34036725 |
atggtgtttgaaagacaataactctgccttaatttttcctttatgttatatacattttcaattatgtattggctttcatgcaattaaaatccattcaagt |
34036824 |
T |
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| Q |
154 |
tcctctcaacttttacttttcctttcagtttcttaccaattgttttttagtttagttatct |
214 |
Q |
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|||||||| |||||||||||| ||| |||||||||||| |||| ||||||||||| |
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| T |
34036825 |
tcctctca------acttttcctttccttttgttaccaattgttctttattttagttatct |
34036879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 6688626 - 6688699
Alignment:
| Q |
65 |
aagacaataactctgccttattttgtcctctatgtcgtatacattttcaattatgtattggctttcatgcaatt |
138 |
Q |
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| T |
6688626 |
aagacagtaactctgccttatttaatcctctatgtcgtatacattttcaattatgttattgctttcatgcaatt |
6688699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 31014966 - 31015046
Alignment:
| Q |
54 |
atggtgtttcaaagacaataactctgccttattt----tgtcctctatgtcgtatacattttcaattatgtattggctttc |
130 |
Q |
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| T |
31014966 |
atggtgtttgaaagacaataactctgccttaattaatttttcctttatgttatatacattttcaattatgtattggctttc |
31015046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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