View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8161_low_3 (Length: 467)
Name: NF8161_low_3
Description: NF8161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8161_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 2943648 - 2943183
Alignment:
| Q |
1 |
caggaatatttggaagcttggtcggtgcttgggtaaattttgaatgatcgggttgtaacctcatttggcttcatgatcaaaaattgctcctgaacagtgt |
100 |
Q |
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| T |
2943648 |
caggaatatttggaagcttggtcggtgcttgggtaaattttgaatgatcgggttgtaatctcatttggcttcatgatcaaaaattgctcctgaacagtgt |
2943549 |
T |
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| Q |
101 |
tcaataaaaattaaatacctaaacttgaagatcaatgaaactatacaactggaatggtnnnnnnncaatatgctgaagttgaccaaatggttcagcatag |
200 |
Q |
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| T |
2943548 |
tcaataaaaattaaatacctaaacttgaagatcaatgaaactatacaactggaatggtaaaaaaacaatatgctgaagttgaccaaatggttcagcatag |
2943449 |
T |
|
| Q |
201 |
tacctccatcaacgtgatctctttggagcaatcaaactgcaacacaacataaccaaacttgaaacatattctaattaatattgtgtagtgaccttaatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2943448 |
tacctccatcaacgtgatctctttggagcaatcaaactgcaacacaacataaccaaacttgaaaaatattctaattaatattgtgtagtgaccttaatta |
2943349 |
T |
|
| Q |
301 |
aatataagtatctggacatgcatttgttattttccttgccatgtgatgcagtcaattcaactcactgactagagataatctgaccaaacaaattcttata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
2943348 |
aatataagtatctggacatgcatttgttattttccttgccatgtgatgcagtcaattcaactcactgactagagat-atttgaccaaacaaattcttata |
2943250 |
T |
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| Q |
401 |
tgaactaaatgttccttcgttataattttaacaatgcccttttatatgaactgtgatcacggatcat |
467 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2943249 |
tgaactaaatgttccttcgttataatttttacaatgcccttttatatgaactgtgatcacggatcat |
2943183 |
T |
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