View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8161_low_4 (Length: 418)
Name: NF8161_low_4
Description: NF8161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8161_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 36811296 - 36811489
Alignment:
| Q |
18 |
attcaatctgtcaaaaaacgtggaatgaaatcagagtttgtaggttcatgtatagaaaattggactaaaaaatggttctctaaagtcacacttggaattg |
117 |
Q |
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| T |
36811296 |
attcaatctgtcaaaaaacgtggaatgaaatcagagtttgtaggttcatgtatagaaaattggactaaaaaatggttctctaaagtcacacttggaattg |
36811395 |
T |
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| Q |
118 |
atccaaatgtgacacagaaacacatggcaattcagttacataaagtttcaaccgagtgtttgattaaaatgcttccaactgaagaaaattctgt |
211 |
Q |
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| T |
36811396 |
atccaaatgtgacacagaaacacatgccaattcagttacataaagtttcaaccgagtgtttgattaaaatgcttccaactgaagaaaattctgt |
36811489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 234 - 400
Target Start/End: Original strand, 5922658 - 5922833
Alignment:
| Q |
234 |
ctttaagattcaatggtaaaaagatagggcttgaacttttgaggtttcgc----------tgctaatatttttagagaaaggtaaatataaatatatatt |
323 |
Q |
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| T |
5922658 |
ctttaagatccaatggtaaaaagatagg-cttgaacttttgaggttccgcgtaccagctctgctaatatttttagagaaaggtaaatataaatatatatt |
5922756 |
T |
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| Q |
324 |
tgtaagtgttctttaagttttaatgtcttttttaatttagatcgagacataatttcctcaccctaaatttcttttat |
400 |
Q |
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| T |
5922757 |
tgtaagtgttctttaagtcttaatgtcttttttaatttagatcaagacatcatttcctcaccctaaatttcttttat |
5922833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 400
Target Start/End: Original strand, 5913576 - 5913750
Alignment:
| Q |
234 |
ctttaagattcaatggtaaaaagatagggcttgaacttttgaggtt------tcg----ctgctaatatttttagagaaaggtaaatataaatatatatt |
323 |
Q |
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| T |
5913576 |
ctttaagatccaatggtaaaaagataggctttaaacttttgaggttccacgttcgagctctggtagtatatttagagaaagataaatataaatat--att |
5913673 |
T |
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| Q |
324 |
tgtaagtgttctttaagttttaatgtcttttttaatttagatcgagacataatttcctcaccctaaatttcttttat |
400 |
Q |
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| T |
5913674 |
tgtaagtgttgtttgagtcttaatgtcttttttattttagatcgagacataatttcttcaccctaaatttctcttat |
5913750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 5922589 - 5922627
Alignment:
| Q |
198 |
gaagaaaattctgttactactaacaagttcaaattgctt |
236 |
Q |
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| T |
5922589 |
gaagaaaactatgttactactaacaagttcaaattgctt |
5922627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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